View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10674_low_7 (Length: 225)
Name: NF10674_low_7
Description: NF10674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10674_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 43226307 - 43226501
Alignment:
| Q |
14 |
cataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaagactccagcgtctaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
43226307 |
cataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaaggctccagtgtctaaa |
43226406 |
T |
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| Q |
114 |
attttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaattatatcatggatccataa |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43226407 |
atttgcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaatgatatcatggatccataa |
43226501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 41651793 - 41651618
Alignment:
| Q |
15 |
ataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaagactccagcgtctaaaa |
114 |
Q |
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|||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
41651793 |
ataggaccagacctagaagccacttcacctaaaggtaagttatttaggacatgcaatccaaatatggcagagacattttctaaggctccagcatctaaaa |
41651694 |
T |
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| Q |
115 |
ttttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaat |
190 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41651693 |
ttttcttagccccggcacctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaat |
41651618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 208
Target Start/End: Original strand, 43211619 - 43211816
Alignment:
| Q |
11 |
aagcataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaagactccagcgtct |
110 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
43211619 |
aagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaatatggcagagacattttctaaggctccagcatct |
43211718 |
T |
|
| Q |
111 |
aaaattttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaattatatcatggatccataa |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| | ||| |||||||||| |
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| T |
43211719 |
aaaattttcttagccccggcacctccttcttctgctggttgaaaaacaagaacaatcgttccctgtgcaaaataaggaatgaggtcacggatccataa |
43211816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 41657809 - 41657610
Alignment:
| Q |
11 |
aagcataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaagactccagcgtct |
110 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||| |||| | || ||||||||||||||||||||| |||||||||||| |||||| ||| |
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| T |
41657809 |
aagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgatatgcaatccaaatatggcagaaacattttctaaggctccagaatct |
41657710 |
T |
|
| Q |
111 |
aaaattttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctatac--aaaataaggaattatatcatggatccataa |
208 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
41657709 |
aaaattttcttggcccctccacctccttcttctgctggttgaaaaacaagaacaactgttccctataccaaaaataaggaatgatatcacagatccataa |
41657610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 43204600 - 43204784
Alignment:
| Q |
15 |
ataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaatatggcagagacattttctaagactccagcgtctaaaa |
114 |
Q |
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|||||||| ||||| || ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||||| |
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| T |
43204600 |
ataggaccggacctagaagccacttcacctagaggtaagttatttaggacatgcaatccaaatatggcagagactttttccaaggcaccagcatctaaaa |
43204699 |
T |
|
| Q |
115 |
ttttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctata--caaaataaggaattatatca |
197 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |||||| |
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| T |
43204700 |
tttttttagccccaccacctccttcttctgctggttgaaaaacaagaactattgttccctataataaaaataaggaatgatatca |
43204784 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 25928703 - 25928780
Alignment:
| Q |
131 |
acctccttcttctgctggttgaaaaacaagaacaacagttccctatacaaaataaggaattatatcatggatccataa |
208 |
Q |
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|
|||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| |
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| T |
25928703 |
acctccttcttcggctggttgaaaaacaagaacaacatttccctgtacaaaataaggaatgatatcatggatccataa |
25928780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 25928633 - 25928702
Alignment:
| Q |
79 |
tggcagagacattttctaagactccagcgtctaaaattttcttagccccagcacctccttcttctgctgg |
148 |
Q |
| |
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|||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25928633 |
tggcagagacattttccaagattccagggtctaaaattttcttagccccaacacctccttcttctgctgg |
25928702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 5071420 - 5071529
Alignment:
| Q |
65 |
atgcaatccaaatatggcagagacattttctaagactccagcgtctaaaattttcttagccccagcacctccttcttctgctggttgaaaaacaagaaca |
164 |
Q |
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|||||||||||| || |||| |||||||||||| | || || |||||||||||||||||||| | |||||||| ||||||||||| |||||||||||| |
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| T |
5071420 |
atgcaatccaaagatagcagtgacattttctaatgccccggcatctaaaattttcttagcccctccgcctccttcctctgctggttggaaaacaagaaca |
5071519 |
T |
|
| Q |
165 |
acagttccct |
174 |
Q |
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| T |
5071520 |
atggttccct |
5071529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 174
Target Start/End: Complemental strand, 9419087 - 9419000
Alignment:
| Q |
87 |
acattttctaagactccagcgtctaaaattttcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccct |
174 |
Q |
| |
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||||||||||| ||| || ||||| ||||||||||| || |||||||||| |||||||| || ||||||||||||||| |||||| |
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| T |
9419087 |
acattttctaacgctctagaatctaatattttcttagctcctacacctccttcgtctgctggatggaaaacaagaacaacaattccct |
9419000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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