View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10675_high_1 (Length: 364)
Name: NF10675_high_1
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 33618460 - 33618746
Alignment:
| Q |
1 |
gtagtagtgttgaggttgatgaattgtgggagttttaaagctagtgatttagaaatttatgtgagaggtcctaattcaatgttgcatcaaccaatggtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618460 |
gtagtagtgttgaggttgatgaattgtgggagttttaaagctagtgatttagaaatttatgtgagaggtcctaattcaatgttgcatcaaccaatggtaa |
33618559 |
T |
|
| Q |
101 |
gagaataatacaatgcgaagtttgagatcctttggtcttctatttccacatgttttctgagctttgaccatttcattgcttccctagttccatggtcgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618560 |
gagaataatacaatgcgaagtttgagatcgtttggtcttctatttccacatgttttctgagctttgaccatttcattgcttccctagttccatggtcgag |
33618659 |
T |
|
| Q |
201 |
tggagtggcagtgcacccatcatgcatcagagacannnnnnncttttggcaaagctacattgagcttttttaacacgtggttatatg |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33618660 |
tggagtggcagtgcacccatcatgcatcagagacatttttttcttttggtaaagctacattgagcttttttaacacgtggctatatg |
33618746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University