View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10675_high_5 (Length: 230)
Name: NF10675_high_5
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5262523 - 5262734
Alignment:
| Q |
1 |
aatccacatctattcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtcagtgcctctgtagtcctcgatgatgagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
5262523 |
aatccacatctattcagttcaagggataccaagttgagtaaataacagtccccaagccaatgtggaaagcctgtgcctctgtagtcctcgatgatgagac |
5262622 |
T |
|
| Q |
101 |
tattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctctgtaaccatatctcatatgcaatgcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5262623 |
tattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctttgtaaccatatctcatatgcaatgcttc |
5262722 |
T |
|
| Q |
201 |
cagatgtgtctt |
212 |
Q |
| |
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|||||||||||| |
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| T |
5262723 |
cagatgtgtctt |
5262734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5279399 - 5279610
Alignment:
| Q |
1 |
aatccacatctattcagttcaagggataccaagttgagtaaataacagtccctaagccaatgtagaaagtcagtgcctctgtagtcctcgatgatgagac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
5279399 |
aatccacatctattcagttcaagggatactaaattgagtaaataacagtccccaagccaatgtggaaagccagtgcctctgtagtcctcgatgatgagac |
5279498 |
T |
|
| Q |
101 |
tattcaggttgctatttggttcgagaacctccaagacatccttctcaactattgagccatcagttgttcctctgtaaccatatctcatatgcaatgcttc |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |
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| T |
5279499 |
tattgaggttgctatttggttcgagaacctccaagacatccctctcaactattgagccatcagttgttcttctgtaaccatacctcatatgcaatacttc |
5279598 |
T |
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| Q |
201 |
cagatgtgtctt |
212 |
Q |
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|| |||| |||| |
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| T |
5279599 |
caaatgtctctt |
5279610 |
T |
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