View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10675_low_1 (Length: 465)
Name: NF10675_low_1
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 45 - 283
Target Start/End: Complemental strand, 36694475 - 36694246
Alignment:
| Q |
45 |
ggcttgagtcttgacctctctttctttcaaaaggaaaaaagatatagagcaactactaagaatcaaagttgatgtttagaattatttatacacgctttaa |
144 |
Q |
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| T |
36694475 |
ggcttgagtattga--tctctttctttcaaaaggaaaaaagatatagagcaaccactaagaatcaaagtt------tagaattatttatacacgctt-aa |
36694385 |
T |
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| Q |
145 |
ttacacggtcaaaaggggagccaattccacaaaactattagcgtcaatggcaaagtcgatgatgttacatgacttaatagctaccacaattttcctacac |
244 |
Q |
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| T |
36694384 |
ttacacggtcaaaaggggagccaattccacaaaactattagcgtcaatggcaaagtcgatgatgttacatgacttaatagctaccacaattttcctacac |
36694285 |
T |
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| Q |
245 |
gtattaaaagtggttcaaaaataattgcatataattaag |
283 |
Q |
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| T |
36694284 |
gtattaaaagtggttcaaaaataattgcatataattaag |
36694246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 294 - 452
Target Start/End: Complemental strand, 36692771 - 36692613
Alignment:
| Q |
294 |
cttcatagtgtacttggtggaatcatggaattctctaatcaattcaaagattcatttaggcaaggtcttattgctggctattttttcactgcaacctttg |
393 |
Q |
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| T |
36692771 |
cttcatactgtaattggtggaatcatggaattctctaatcaattcaaagattcatttaggcaaggtcttattgctggctattttttcactgcaacctttg |
36692672 |
T |
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| Q |
394 |
tcattgttttttatatgtcttattgtctacccacacaagttatgaagaagagaaaaaag |
452 |
Q |
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| T |
36692671 |
tcattgttttttatatgtcttattgtctacccacacaagttatgaagaagagaaaaaag |
36692613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 315 - 451
Target Start/End: Complemental strand, 23661440 - 23661304
Alignment:
| Q |
315 |
atcatggaattctctaatcaattcaaagattcatttaggcaaggtcttattgctggctattttttcactgcaacctttgtcattgttttttatatgtctt |
414 |
Q |
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| T |
23661440 |
atcatggaattctctaaccaattcaaagaatcatttaagcatggtcttattgctgggtattgttttactgcaacttttgtcatagttttttatatgttct |
23661341 |
T |
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| Q |
415 |
attgtctacccacacaagttatgaagaagagaaaaaa |
451 |
Q |
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| T |
23661340 |
attgcctacccgcacaagttatcaagaatagaaaaaa |
23661304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 315 - 451
Target Start/End: Original strand, 23797130 - 23797266
Alignment:
| Q |
315 |
atcatggaattctctaatcaattcaaagattcatttaggcaaggtcttattgctggctattttttcactgcaacctttgtcattgttttttatatgtctt |
414 |
Q |
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| T |
23797130 |
atcatggaattctctaaccaattcaaagaatcatttaagcatggtcttattgctgggtattgttttactgcaacttttgtcatagttttttatatgttct |
23797229 |
T |
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| Q |
415 |
attgtctacccacacaagttatgaagaagagaaaaaa |
451 |
Q |
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|||| |||||| |||||||||| ||||| |||||||| |
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| T |
23797230 |
attgcctacccgcacaagttatcaagaatagaaaaaa |
23797266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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