View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10675_low_11 (Length: 221)
Name: NF10675_low_11
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 26072299 - 26072490
Alignment:
| Q |
14 |
agaagaaacagtagatatcggaatcgctaatatatccctagccatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaaagttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26072299 |
agaagaaacagtagatatcggaatcgctaatatatccctagccatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaaagttca |
26072398 |
T |
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| Q |
114 |
aatccttcataatcatcttcaacctcatcttctaagtatctaaccaactcacttgatttatgttcactttgccttcttttaacccttcttcg |
205 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26072399 |
aatcattcataatcatcttcaacctcatcttctaagtatcttaccaactcacttgagttatgttcactttgccttcttttaacccttcttcg |
26072490 |
T |
|
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Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 44271087 - 44271278
Alignment:
| Q |
14 |
agaagaaacagtagatatcggaatcgctaatatatccctagccatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaaagttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44271087 |
agaagaaacagtagatatcggaatcgctaatatatccctagccatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaaagttca |
44271186 |
T |
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| Q |
114 |
aatccttcataatcatcttcaacctcatcttctaagtatctaaccaactcacttgatttatgttcactttgccttcttttaacccttcttcg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44271187 |
aatccttcataatcatcttcaacctcatcttctaagtatcttaccaactaacttgagttatgttcactttgccttcttttaacccttcttcg |
44271278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 1671403 - 1671212
Alignment:
| Q |
14 |
agaagaaacagtagatatcggaatcgctaatatatccctagccatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaaagttca |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1671403 |
agaagaaacagtagatatcggaatcgataatatatccctagctatgagagaaagaacaatgtactttgtgctcttacttttccaccatttcaaatgttca |
1671304 |
T |
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| Q |
114 |
aatccttcataatcatcttcaacctcatcttctaagtatctaaccaactcacttgatttatgttcactttgccttcttttaacccttcttcg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1671303 |
aatccttcataatcatcttcaacctcatcttctaagtatcttaccaactcacttgagttatgttcactttgccttcttttaacccttcttcg |
1671212 |
T |
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