View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10675_low_14 (Length: 207)
Name: NF10675_low_14
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 38532517 - 38532337
Alignment:
| Q |
13 |
atgaagattaattaatgaaatttacttcatgaaaattgtaataaaattgaagacttgatactaacctataccaatagcctcctttcctttcatgatacgc |
112 |
Q |
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| T |
38532517 |
atgaagattaattaatgaaatttacttcatgaaaattgtaataaaattgaagacttgatactaacctataccaatagcctcctttcctttcatgatacgc |
38532418 |
T |
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| Q |
113 |
aaacgtttgcatgattcaacaaacatcctggttgacatatgaagaattcatgttagagtgctaagcatgtgctttataact |
193 |
Q |
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| T |
38532417 |
aaacgtttgcatgattcaacaaacatcctggttgacatatgaagaattcatgttagagtgctaagcatgtgctttataact |
38532337 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 31338116 - 31338188
Alignment:
| Q |
70 |
atactaacctataccaatagcctcctttcctttcatgatacgcaaacgtttgcatgattcaacaaacatcctg |
142 |
Q |
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||||||||| | ||||| || |||||||||||||||||||| | ||| |||||||| |||| |||||||||| |
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| T |
31338116 |
atactaaccgagtccaatggcttcctttcctttcatgatacgtagacgcttgcatgaatcaataaacatcctg |
31338188 |
T |
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