View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10675_low_2 (Length: 396)
Name: NF10675_low_2
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10675_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Original strand, 54958571 - 54958936
Alignment:
| Q |
20 |
tgaagcacatgaaagaaggtagctcaattataaactcaacctcagtgaatgcctacacaggtaaagcagaaacactcgactacacatcgacgaaaggagc |
119 |
Q |
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| T |
54958571 |
tgaagcacatgaaagaaggtagctcaatcataaactcaacctcagtgaatgcctacacaggtaaagcagaaacactcgactacacatcgacgaaaggagc |
54958670 |
T |
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| Q |
120 |
cattgttgcattcactagaggtcttgctcagcagttggtgagaaagggaataagagtgaatggtgttgcaccaggaccaatttggacgccagttcaacca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
54958671 |
cattgttgcattcactagaggtcttgctcagcagttggtgagcaagggaataagagtgaatgctgttgctccaggaccaatttggacgccagttcaacca |
54958770 |
T |
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| Q |
220 |
gctactatgacttatgagaagatacagaatttggggtcagatgtgccaatgaaacgagcaggtcagccttgtgagattgcaccttgttatttgttcttgg |
319 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54958771 |
gctactatgccttatgagaagatacagaatttggggtcagatgtgccaatgaaacgagcaggtcagccttgtgagattgcaccttgttatttattcttgg |
54958870 |
T |
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| Q |
320 |
cttctcttcaggactcttcttactttactggtcaagtcctccatccaaatggtactgtgtgcctttgct |
388 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
54958871 |
cttctctacaggactcttcttactttactggtcaagtcctccatccaaatgg---tgtgtgcctttgct |
54958936 |
T |
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