View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10675_low_3 (Length: 373)

Name: NF10675_low_3
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10675_low_3
NF10675_low_3
[»] chr4 (12 HSPs)
chr4 (18-291)||(4011896-4012170)
chr4 (18-169)||(4003417-4003568)
chr4 (18-164)||(3952844-3952990)
chr4 (18-176)||(3821681-3821839)
chr4 (18-154)||(4026653-4026789)
chr4 (19-176)||(3812109-3812266)
chr4 (18-176)||(3988306-3988464)
chr4 (291-356)||(4012262-4012327)
chr4 (18-176)||(3915785-3915946)
chr4 (18-120)||(3926838-3926940)
chr4 (212-261)||(4026853-4026902)
chr4 (89-165)||(4220990-4221066)
[»] chr5 (1 HSPs)
chr5 (18-176)||(13399258-13399416)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 4011896 - 4012170
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||||| |||||| |||    
T  4011896 caaaggcatttatttgctttcgaggaaaagcgataaccaaatggccaaaaaatccgtggcggatgtcttcacctctaaagcttacaaaaacatcatcctt 4011995  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaacnnnnnnncttaggttcttcataaaaacttagatctctata 217  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||       |||||||||||||||||||||||||||||||||    
T  4011996 tgattggggagaaatgtttgacggtgccttttctgctacagccttcaattcaataagaacgaaaaaacttaggttcttcataaaaacttagatctctata 4012095  T
Q  218 acattaacaaaatacaacaacaatt-aaaaaatgttactacttaattatcaaaaagtgatgctattcatatctct 291  Q
    ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||||| ||||||||||||||    
T  4012096 acattaacaaaatacaacaacaattaaaaaaaatttactacttaatcatcaaaaagtgattctattcatatctct 4012170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 4003417 - 4003568
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||||||||||||||| || ||||||||||| |||| |||||||| ||  ||||| || ||||||||||| |||||||||||||||||| ||||||||||    
T  4003417 caaaggcatttatttgtttacgaggaaaagctttaatcaaatggccaagaaatccgtgacggatgtcctcgcccctaaagcttacaaaaacatcatactt 4003516  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttcaattta 169  Q
    | |||||||||||  |||||||  |||||||||||||||| |||||||||||    
T  4003517 taattggggagcatcgtttgacattgccttttctgctacacccttcaattta 4003568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 3952990 - 3952844
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||||||||||||||||||| |||||||||||||| ||||||| | ||  || || |||||||||||||| |||||||||||||||||| ||||||||||    
T  3952990 caaaggcatttatttgcttttgaggaaaagccttagccaaatgaccaagaaagccgtggcggatgtcctctcccctaaagcttacaaaaacatcatactt 3952891  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttca 164  Q
    ||||| ||||| | ||||||||  || ||||||||||||| ||||||    
T  3952890 tgattcgggagaattgtttgacattgtcttttctgctacacccttca 3952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 3821681 - 3821839
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||  || |  |||||||| ||||| |||||||||||||||||| ||||||||||    
T  3821681 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggctaagaaagctgtggcggatatcctcgcccctaaagcttacaaaaacatcatactt 3821780  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 176  Q
    | |||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3821781 taattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3821839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 4026653 - 4026789
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| ||  || || |||||||||||||||||||||||| |||| ||| ||||||||||    
T  4026653 caaaggcatttatttgctttcgagaaaaagccttagccaaatggccaagaaagccgtggcggatgtcctcacccctaaagtttacgaaaacatcatactt 4026752  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgct 154  Q
    || ||| |||||| |||| |||  |||||||||||||    
T  4026753 tggttgaggagcattgttagacattgccttttctgct 4026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 3812109 - 3812266
Alignment:
Q  19 aaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatacttt 118  Q
    ||||||||||||||||||||||| |||||||| | ||||||||| ||  ||    | |||||||||||| |||||||||||||||||| |||||||||||    
T  3812109 aaaggcatttatttgctttcgagaaaaagcctcagccaaatggctaagaaagaacttgcggatgtcctcgcccctaaagcttacaaaaacatcatacttt 3812208  T
Q  119 gattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 176  Q
    ||||| |||| | |||||| |  | || ||||||||||| ||||||| ||| ||||||    
T  3812209 gattgaggagtattgtttggcatttccctttctgctacacccttcaacttattaacaa 3812266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 3988306 - 3988464
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    ||||| ||||||||| |||| || ||||||||||||||||||||| ||  || || |  ||||||||||  ||||||||||| |||||| ||||||| ||    
T  3988306 caaagacatttattttcttttgacgaaaagccttaaccaaatggccaagaaagccgtctcggatgtccttgcccctaaagctcacaaaaacatcatattt 3988405  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 176  Q
    ||||||||||||  || |||||  || ||||||| ||||| ||||||| ||| ||||||    
T  3988406 tgattggggagcgttggttgacattgacttttctcctacacccttcaacttattaacaa 3988464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 356
Target Start/End: Original strand, 4012262 - 4012327
Alignment:
Q  291 tggtatcattaatatgagtcagaagatataacatgagctttagatcaggctcaaattttataagag 356  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||    
T  4012262 tggtatcattaatatgagccagacgatataacatgagctttagatcagagtcaaattttataagag 4012327  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 3915946 - 3915785
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||| ||||||||||||||| ||  |||||||||||||||||||| ||  || ||    ||||| ||||  || ||||||||||||||| ||||||||||    
T  3915946 caaaagcatttatttgcttttgacaaaaagccttaaccaaatggctaagaaagccgctacggatttccttgccactaaagcttacaaaaacatcatactt 3915847  T
Q  118 tgatt---ggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 176  Q
    ||| |   | |||| | ||||||||  || |||||| || ||| ||||||||||| ||||||    
T  3915846 tgaatgaggaggagtattgtttgacattgtcttttccgcaacacccttcaatttattaacaa 3915785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 3926940 - 3926838
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    |||| ||||||||||||||| || ||||||||||||||||||||| ||  || |     || |||||||  || ||||||||||||||| ||||||||||    
T  3926940 caaaagcatttatttgcttttgaagaaaagccttaaccaaatggctaagaaagctgctacgaatgtccttgccactaaagcttacaaaaacatcatactt 3926841  T
Q  118 tga 120  Q
    |||    
T  3926840 tga 3926838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 4026853 - 4026902
Alignment:
Q  212 tctataacattaacaaaatacaacaacaattaaaaaatgttactacttaa 261  Q
    |||||||||||||||||||||| ||| | |||| ||||||||||||||||    
T  4026853 tctataacattaacaaaatacagcaaaatttaataaatgttactacttaa 4026902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 4220990 - 4221066
Alignment:
Q  89 cccctaaagcttacaaaagcatcatactttgattggggagcaatgtttgacggtgccttttctgctacagccttcaa 165  Q
    |||||||||||||||||| ||||| |||||||||  |||| | ||||||||  ||| ||||||||| || |||||||    
T  4220990 cccctaaagcttacaaaaacatcaaactttgatttaggagtattgtttgacattgctttttctgctgcacccttcaa 4221066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 13399258 - 13399416
Alignment:
Q  18 caaaggcatttatttgctttcgaggaaaagccttaaccaaatggcaaaataatccatggcggatgtcctcacccctaaagcttacaaaagcatcatactt 117  Q
    ||||| |||||||||||||| ||| ||||||||||| |||||||| ||  || || ||| ||||||||||||||||||||||||||||| |||| ||  |    
T  13399258 caaagacatttatttgcttttgagaaaaagccttaaacaaatggccaagaaagccgtggtggatgtcctcacccctaaagcttacaaaaacatcgtatat 13399357  T
Q  118 tgattggggagcaatgtttgacggtgccttttctgctacagccttcaatttaataacaa 176  Q
    ||||||||||||| |  |||||  ||| ||||| |||| | ||||||| ||| ||||||    
T  13399358 tgattggggagcatttcttgacactgctttttcagctatacccttcaacttattaacaa 13399416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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