View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10675_low_7 (Length: 253)

Name: NF10675_low_7
Description: NF10675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10675_low_7
NF10675_low_7
[»] chr5 (8 HSPs)
chr5 (19-243)||(10046156-10046380)
chr5 (41-243)||(39676122-39676324)
chr5 (41-243)||(10866558-10866760)
chr5 (41-243)||(10873545-10873747)
chr5 (41-243)||(10878616-10878818)
chr5 (41-243)||(10883687-10883889)
chr5 (41-243)||(10887605-10887807)
chr5 (142-227)||(37948119-37948204)
[»] chr8 (1 HSPs)
chr8 (142-233)||(30709594-30709685)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 10046156 - 10046380
Alignment:
Q  19 gtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggaga 118  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046156 gtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggaga 10046255  T
Q  119 gagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046256 gagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagat 10046355  T
Q  219 tccggtgggagttgccggacctttg 243  Q
    |||||||||||||||||||||||||    
T  10046356 tccggtgggagttgccggacctttg 10046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 39676122 - 39676324
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    ||||||| || |||||||||||||| || || |||||||||  |||||| || | |||  | |||||||| |||||||||||||| |||| ||||||       
T  39676122 caattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtgattaggaaccaagctgtggagagagttactggaaggtcacttga 39676221  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||    
T  39676222 aggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagatgccaatagggtttgttcagattccggtgggtgttgccggtcct 39676321  T
Q  241 ttg 243  Q
    |||    
T  39676322 ttg 39676324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 10866558 - 10866760
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    ||||||| || |||||||||||||| || || |||||||||  |||||| ||    ||  | |||||||||||||||||||||||||||| ||||||       
T  10866558 caattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagcggtggagagagttaccggaaggtcacttga 10866657  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||    
T  10866658 aggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgagatgccgatagggtttgttcagattccggtgggtgttgccggtcct 10866757  T
Q  241 ttg 243  Q
    |||    
T  10866758 ttg 10866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 10873747 - 10873545
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    ||||||| || |||||||||||||| || || |||||||||  |||||| ||    ||  | |||||||| ||||||||||||||||||| ||||||       
T  10873747 caattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttga 10873648  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||    
T  10873647 aggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcct 10873548  T
Q  241 ttg 243  Q
    |||    
T  10873547 ttg 10873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 10878818 - 10878616
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    ||||||| || |||||||||||||| || || |||||||||  |||||| ||    ||  | |||||||| ||||||||||||||||||| ||||||       
T  10878818 caattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttga 10878719  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||    
T  10878718 aggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcct 10878619  T
Q  241 ttg 243  Q
    |||    
T  10878618 ttg 10878616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 10883889 - 10883687
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    ||||||| || |||||||||||||| || || |||||||||  |||||| ||    ||  | |||||||| ||||||||||||||||||| ||||||       
T  10883889 caattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaatattaggaaccaagccgtggagagagttaccggaaggtcacttga 10883790  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||    
T  10883789 aggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagatgcccatagggtttgttcagattccggtgggtgttgccggtcct 10883690  T
Q  241 ttg 243  Q
    |||    
T  10883689 ttg 10883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 10887807 - 10887605
Alignment:
Q  41 caattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctc 140  Q
    |||||||||| ||||| ||||| || || ||||||||||||   ||||| ||   |||  | |||||||| |||||||| |||||||||| ||||||       
T  10887807 caattccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaagattaggaaccaagcagtggagagggttaccggaaggtcacttga 10887708  T
Q  141 gggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgccggacct 240  Q
     |||||||| ||| |||||||||| || ||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||| |||    
T  10887707 aggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgagatgccgatagggtttgttcaaattccggtgggtgttgccggtcct 10887608  T
Q  241 ttg 243  Q
    |||    
T  10887607 ttg 10887605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 37948119 - 37948204
Alignment:
Q  142 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtggg 227  Q
    ||||||||| | ||||| |||||||| ||  |||| ||||| ||||||||||| |||||| |||| | | |||| |||||||||||    
T  37948119 ggtttaccattagaaggatttgattacgaagcgattttagggcagtgttgtgaaatgccggtagggtatattcaaattccggtggg 37948204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 30709685 - 30709594
Alignment:
Q  142 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgc 233  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || |||||    
T  30709685 ggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgc 30709594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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