View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10676_low_1 (Length: 405)
Name: NF10676_low_1
Description: NF10676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10676_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 24071220 - 24071572
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24071220 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaa |
24071319 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24071320 |
gcttcattatgttcttgatttcttgacaaccatgcatgtaaaagttcacaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagtt |
24071419 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24071420 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtgtttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
24071519 |
T |
|
| Q |
315 |
acaattatagttagtcactatattactaactaaatactcgcagtaatatatat |
367 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
24071520 |
acaattatagttagtcactacattactaactaaatactcccagtaatatatat |
24071572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 24079516 - 24079216
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24079516 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaa |
24079417 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24079416 |
gcttcattatgttcttgatttcttgacaaccatgcatgtaaaagttcccaacagaggtatcctacatcgttaagatgatcttctccttcaatacttagtt |
24079317 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24079316 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
24079217 |
T |
|
| Q |
315 |
a |
315 |
Q |
| |
|
| |
|
|
| T |
24079216 |
a |
24079216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 28567772 - 28568100
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
28567772 |
atccttctcagccttcaaatcatgcatgaatgtgtttttatccataaatcttgacaatccatagtgaagtggattctgaagagtgtttgcaacatataaa |
28567871 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
|| || ||||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28567872 |
gcatccttatgttcttggtttcttgacaaccatgcatgtagaagctcacagcagagatatcctacatcgttaagactatcttctccttcaatacttagtt |
28567971 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28567972 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
28568071 |
T |
|
| Q |
315 |
acaattatagttagtcactatattactaa |
343 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
|
|
| T |
28568072 |
acaattatagttagtcattttattactaa |
28568100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 28574600 - 28574928
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || || ||||||||||||||||||||||||| ||||| ||||||||||||| |||| |||| | || | |
|
|
| T |
28574600 |
atccttctcagccttcaaatcatggatgaatgtgcttttatccataaatcttgacaagccatagtgaagaggattctgaagagtgtttacaacatgtata |
28574699 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| |||||||||||||| || || |||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
28574700 |
gcttcattatgttcttggtttcttgatagccaattatgtagaagctcacggcagagatatcctacatcgttaagactatcttctccgtcaatacttagtt |
28574799 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28574800 |
gtgatgcttcgtaaagggcaatgaggcctttcaaatcctcaccatgtttttcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacaca |
28574899 |
T |
|
| Q |
315 |
acaattatagttagtcactatattactaa |
343 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28574900 |
acaattatagttagtcactatattactaa |
28574928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 28579652 - 28579990
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| || || ||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| | || | |
|
|
| T |
28579652 |
atccttctcagccttcaaatcatggatgaatgtgcttttatccatgaatcttgacaagccatagtgaagtggattctgaagagtgtttgcaacatgtata |
28579751 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
||||||||||||||||| |||||||| | |||| ||||||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28579752 |
gcttcattatgttcttggtttcttgatagccatccatgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagtt |
28579851 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
| |||||||||||||| | ||| |||||||| || || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28579852 |
gtgatgcttcgtaaagtgtaattagaccttttacttcttctccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacaca |
28579951 |
T |
|
| Q |
315 |
acaattatagttagtcactatattactaactaaatactc |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28579952 |
acaattatagttagtcactatattactaactaaatactc |
28579990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 26315654 - 26315989
Alignment:
| Q |
15 |
atccttttcagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaa |
114 |
Q |
| |
|
|||||| ||| ||||| ||| |||||||||| | || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
26315654 |
atccttctcatccttcgaatcatggatgaatgcgcttttatccataaatcttgataagccataatgaagtggattctgaagagtgtttgcaacatatata |
26315753 |
T |
|
| Q |
115 |
gcttcattatgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagtt |
214 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||| ||||||| ||||||| ||||| | |||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26315754 |
gcttgattatgttcttggtgtcttgacagccatccatgtagtagctcacgacaaacgtatcctaaatcgttaagactatcttctccttcaatacttagtt |
26315853 |
T |
|
| Q |
215 |
gcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacaca |
314 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
26315854 |
gtgatgcttcgtaaagggcaacgagacctttcacatcctcgccatgtttttcttcgaacattcttttgttacacttcaagctgtcaaataaatctgcaaa |
26315953 |
T |
|
| Q |
315 |
aca--attatagttagtcactatattactaactaaa |
348 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26315954 |
acaatattatagttagtcactatattactaactaaa |
26315989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 26 - 353
Target Start/End: Original strand, 28585810 - 28586137
Alignment:
| Q |
26 |
ccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaagcttcattatg |
125 |
Q |
| |
|
||||||||| |||||| ||| || || ||||||| |||||||||||||| || ||||||||||||||||||| ||||||||| | || |||||||||||| |
|
|
| T |
28585810 |
ccttcaaatcatggattaatgtgcttttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagcttcattatg |
28585909 |
T |
|
| Q |
126 |
ttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcg |
225 |
Q |
| |
|
|||||| |||||||| | |||| ||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
28585910 |
ttcttggtttcttgatagccatccatgtagaagctcacggcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcg |
28586009 |
T |
|
| Q |
226 |
taaagggcaatgagacctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagt |
325 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28586010 |
taaagagcaataagacctttgacatcctcgccatgtttttctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagt |
28586109 |
T |
|
| Q |
326 |
tagtcactatattactaactaaatactc |
353 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
28586110 |
tggtcactatattactaactaaatactc |
28586137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 20616973 - 20617254
Alignment:
| Q |
24 |
agccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaagcttcatta |
123 |
Q |
| |
|
||||||||||| || |||||||||| || ||||||||||||||||||| ||||| |||| || | ||||||| ||||| ||| |||| ||||| || |
|
|
| T |
20616973 |
agccttcaaatcattgatgaatatgcttttatccataaatcttgacaaaccatagtgaatagggtattgaagagtgtttgaaacatatatagcttggata |
20617072 |
T |
|
| Q |
124 |
tgttcttgatttcttgacaaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgctt |
223 |
Q |
| |
|
|| ||||||| ||||| | |||||| || ||||||||||||| ||| | |||| ||| || |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
20617073 |
tggtcttgatgtcttggaagccatgcttgaagaagctcacaactgaggtaccctaaatcattgagaccatcttctccttcaatacttagttgggatgctt |
20617172 |
T |
|
| Q |
224 |
cgtaaagggcaatgagacctttcacatcctcaccatgtttttct-tcaaacattcttttgttacacttcaagctgtcaaataa |
305 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||| |||| || |||| ||| ||||| |||||||||||| ||||||||| |
|
|
| T |
20617173 |
catacaaggcaatgagacctttcacatcctcaccatattttactctcaatgatt-ttttgctacacttcaagcagtcaaataa |
20617254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 309
Target Start/End: Complemental strand, 2601692 - 2601425
Alignment:
| Q |
42 |
gaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacgtataaagcttcattatgttcttgatttcttgac |
141 |
Q |
| |
|
||||||| || | ||||| || |||||||||||||| |||||||||| |||||| ||||| ||| |||| ||| ||| | || | ||| | ||||| |
|
|
| T |
2601692 |
gaatatgcttttttccattaaccttgacaagccatagtgaagtggatatcgaagagtgtttgtaacatatagagcatcactgtgattttggtgacttgat |
2601593 |
T |
|
| Q |
142 |
aaccatgcatgtagaagctcacaacaaaggcatcctacatcgttaagacgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagac |
241 |
Q |
| |
|
| |||| |||| |||||||||| || || |||| ||||| ||| ||||||||| ||||||||||| || || ||||| || | |||||||||| |
|
|
| T |
2601592 |
agccatccatgaagaagctcactactgagatgccctatatcgtcgagatcatcttctccctcaatacttagctgggaggcttcatacatagcaatgagac |
2601493 |
T |
|
| Q |
242 |
ctttcacatcctcaccatgtttttcttcaaacattcttttgttacacttcaagctgtcaaataaatct |
309 |
Q |
| |
|
||||||||||||||| |||||| ||| |||| |||||| || ||||||||||||||| |||| |
|
|
| T |
2601492 |
tcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatcaagctgtcaaatatatct |
2601425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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