View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10676_low_2 (Length: 313)

Name: NF10676_low_2
Description: NF10676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10676_low_2
NF10676_low_2
[»] chr7 (2 HSPs)
chr7 (133-298)||(46720048-46720214)
chr7 (217-303)||(38838672-38838759)
[»] chr4 (7 HSPs)
chr4 (221-303)||(12034379-12034462)
chr4 (221-303)||(17381281-17381364)
chr4 (227-281)||(17381598-17381653)
chr4 (222-295)||(24806763-24806837)
chr4 (222-295)||(26499277-26499351)
chr4 (262-303)||(46804794-46804835)
chr4 (259-295)||(35255497-35255533)
[»] chr2 (5 HSPs)
chr2 (219-303)||(40124259-40124344)
chr2 (259-302)||(34883934-34883977)
chr2 (261-299)||(39273381-39273419)
chr2 (260-293)||(15844652-15844685)
chr2 (259-303)||(7165772-7165816)
[»] chr5 (1 HSPs)
chr5 (223-300)||(917187-917265)
[»] chr1 (2 HSPs)
chr1 (259-300)||(39162635-39162676)
chr1 (251-303)||(19464242-19464295)
[»] chr8 (2 HSPs)
chr8 (221-295)||(17488227-17488302)
chr8 (258-295)||(35355289-35355326)
[»] chr6 (2 HSPs)
chr6 (261-303)||(10067747-10067789)
chr6 (264-300)||(12291660-12291696)
[»] chr3 (1 HSPs)
chr3 (224-295)||(14984407-14984478)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 133 - 298
Target Start/End: Complemental strand, 46720214 - 46720048
Alignment:
Q  133 cataccatccgcacaacacnnnnnnncttcttcttctatttaagtaattcctaacctttttcatttaatggacactaataaattattagggtaatagtca 232  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46720214 cataccatccgcacaacactttttttcttcttcttctatttaagtaattcctaacctttttcatttaatggacactaataaattattagggtaatagtca 46720115  T
Q  233 ttatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggt 298  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  46720114 ttatggttcctgaatgaataacaagtagtcacaatagtccctcaatgtattgaaattttaaaatggt 46720048  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 38838759 - 38838672
Alignment:
Q  217 attagggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||||||| | ||| |||| ||||||||  |||| ||| ||||||||| ||  |||||||||| |||||||||||| |||||||    
T  38838759 attagggtaataattattttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctg 38838672  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 12034379 - 12034462
Alignment:
Q  221 gggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||||||||| |||| |||||||| ||||| ||| |||||||||||||||||||||||  |||||  ||||| |||||||    
T  12034379 gggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctg 12034462  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 17381281 - 17381364
Alignment:
Q  221 gggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||||||||| |||||||||||||  || ||||| ||||||||||||| |||||||||  |||||| ||||  |||||||    
T  17381281 gggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctg 17381364  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 17381653 - 17381598
Alignment:
Q  227 tagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtat 281  Q
    |||||| | |||| ||||||||| |||||||| |||||||||||||||||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtat 17381598  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 24806837 - 24806763
Alignment:
Q  222 ggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    ||||||||||||| ||||  |||||||  ||| |||| || |||||||||||| ||||||||||||||| |||||    
T  24806837 ggtaatagtcattttggtatctgaatgcgtaataagtagttacaatagtcccttaatgtattgaaatttgaaaat 24806763  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 26499277 - 26499351
Alignment:
Q  222 ggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    ||||||||||||| |||||||||||||  ||| |||| ||||||||| || || |||||||| ||||| ||||||    
T  26499277 ggtaatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatctcttaatgtattaaaattctaaaat 26499351  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 46804794 - 46804835
Alignment:
Q  262 acaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  46804794 acaatagtccctcaatgtatcaaaattttaaaatagtctctg 46804835  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 35255533 - 35255497
Alignment:
Q  259 gtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  35255533 gtcacaatagtctctcaatgtattaaaattttaaaat 35255497  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 40124259 - 40124344
Alignment:
Q  219 tagggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||||||||| | |||| | ||||||  |||| ||| ||||||||||||| | ||||||| |||||||||||||||||||||    
T  40124259 tagggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctg 40124344  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 302
Target Start/End: Original strand, 34883934 - 34883977
Alignment:
Q  259 gtcacaatagtccctcaatgtattgaaattttaaaatggtctct 302  Q
    |||||||||||||||||||||||  |||||||||||| ||||||    
T  34883934 gtcacaatagtccctcaatgtatcaaaattttaaaatagtctct 34883977  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 39273419 - 39273381
Alignment:
Q  261 cacaatagtccctcaatgtattgaaattttaaaatggtc 299  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  39273419 cacaatagtccctaaatgtattgaaatttcaaaatggtc 39273381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 15844685 - 15844652
Alignment:
Q  260 tcacaatagtccctcaatgtattgaaattttaaa 293  Q
    |||||||||||||||||||| |||||||||||||    
T  15844685 tcacaatagtccctcaatgtgttgaaattttaaa 15844652  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 7165816 - 7165772
Alignment:
Q  259 gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    ||||||||||||  |||||||||| |||||||||||| |||||||    
T  7165816 gtcacaatagtctttcaatgtattaaaattttaaaatagtctctg 7165772  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 917265 - 917187
Alignment:
Q  223 gtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtct 300  Q
    |||||||||||| |||||||||||||  |||  | | |||||||| |||||||||||||| ||||||||||||| ||||    
T  917265 gtaatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtct 917187  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 39162676 - 39162635
Alignment:
Q  259 gtcacaatagtccctcaatgtattgaaattttaaaatggtct 300  Q
    ||||||||||||| ||||||||| ||||||||||||||||||    
T  39162676 gtcacaatagtccttcaatgtatcgaaattttaaaatggtct 39162635  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 19464242 - 19464295
Alignment:
Q  251 taacaagt-gtcacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||| ||||||||||||| |||||||||  |||||| |||||||||||||    
T  19464242 taacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctg 19464295  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 17488302 - 17488227
Alignment:
Q  221 gggtaatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    |||||| ||||||| || | ||||||||  |||||||| ||||||||||||||||||||||  ||||||| |||||    
T  17488302 gggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaat 17488227  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 35355289 - 35355326
Alignment:
Q  258 tgtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  35355289 tgtcataatagtctctcaatgtattgaaattttaaaat 35355326  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 10067789 - 10067747
Alignment:
Q  261 cacaatagtccctcaatgtattgaaattttaaaatggtctctg 303  Q
    |||||||||| |||||||||| ||||||||||||| |||||||    
T  10067789 cacaatagtctctcaatgtatcgaaattttaaaatagtctctg 10067747  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 12291696 - 12291660
Alignment:
Q  264 aatagtccctcaatgtattgaaattttaaaatggtct 300  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  12291696 aatagtccctcaatgtattaaaattttaaaatagtct 12291660  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 14984407 - 14984478
Alignment:
Q  224 taatagtcattatggttcctgaatgaataacaagt-gtcacaatagtccctcaatgtattgaaattttaaaat 295  Q
    ||||||||||| |||| ||||||||  |||| ||| ||||||||||||||||||| ||| ||||||| |||||    
T  14984407 taatagtcattttggt-cctgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaat 14984478  T

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