View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10676_low_5 (Length: 223)
Name: NF10676_low_5
Description: NF10676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10676_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 41969403 - 41969222
Alignment:
| Q |
18 |
agaaatgctataaatacgtaactcaacgtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataa |
117 |
Q |
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| T |
41969403 |
agaaatgctataaatacgtaactcaacgtttcttcataatcacaattcacataacttttttgcttttcgtaaagctttgagtaatggcaaaaaattataa |
41969304 |
T |
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| Q |
118 |
catcaatatgctcttcttagttgtgttgtttcttcttgtacagagcaaggtaaatcgacatattattatgctatgcatatttatc |
202 |
Q |
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| T |
41969303 |
catcaatatgctcttcttagttg---tgtttcttcttgtacagagcaaggtaaatcgacatattattatgctatgaatatttatc |
41969222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 1236461 - 1236305
Alignment:
| Q |
23 |
tgctataaatacgtaactcaac---gtttcttcataatcacaattcacataacttttttgcgtttcgtaaagctttgagtaatggcaaaaaattataaca |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
1236461 |
tgctataaatacgtaactcaacaattcttcttcataatcacaattcacataacttttttgcttttagtaaagctttgagtaatggcaaaaaattataaca |
1236362 |
T |
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| Q |
120 |
tcaatatgctcttcttagttgtgttgtttcttcttgtacagagcaaggtaaatcgacata |
179 |
Q |
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| T |
1236361 |
tcaatatgctcttcttagttg---tgtttcttcttgtacaaagcaaggtatattgacata |
1236305 |
T |
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