View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10677_high_3 (Length: 335)
Name: NF10677_high_3
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10677_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 30507222 - 30506906
Alignment:
| Q |
17 |
tatatatattggctgtgagaaacaaagatagggacaaaacagtataagaaattaaagttttatttttctctctagggaagggaaatacaatggtagtaaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
30507222 |
tatatatattggctgtgagaaacaaagatagggacaaaacagcataagaaattaaagttttatttctctctctagggaagggaaataaaatggtagtaaa |
30507123 |
T |
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| Q |
117 |
aagaaagggggaaattaatagaggcataccagtcaatgagaaaggaactgtcattcaaagtttcaacctatagtgtgaagaaaacagaatcatgttcttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30507122 |
aagaaagggggaaattaatagaggcataccagtcaatgagaaaggaactgtcattcaaagtttcaacctatagtgtgaagaaaacagaatcatgttcttt |
30507023 |
T |
|
| Q |
217 |
accccaatttttacctttcatactttttcctgtcgccatctcaatttactgtacatcccttgtttttctattttcataaaaaagccctagc----agcaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30507022 |
accccaatttttacctttcatactttttcctgtcgccatctcaaactactgtacatcccttgtttttctattttcataaaaaagccctagcaagtagcaa |
30506923 |
T |
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| Q |
313 |
cagcatccatttctctg |
329 |
Q |
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||||||||||||||||| |
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| T |
30506922 |
cagcatccatttctctg |
30506906 |
T |
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