View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10677_high_4 (Length: 250)

Name: NF10677_high_4
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10677_high_4
NF10677_high_4
[»] chr1 (3 HSPs)
chr1 (1-240)||(30506312-30506552)
chr1 (177-233)||(36775861-36775916)
chr1 (188-235)||(15492194-15492240)
[»] chr4 (3 HSPs)
chr4 (179-235)||(47158139-47158194)
chr4 (74-117)||(22305841-22305884)
chr4 (187-235)||(9713827-9713874)
[»] chr6 (1 HSPs)
chr6 (177-234)||(28981067-28981123)
[»] scaffold0603 (1 HSPs)
scaffold0603 (138-233)||(7568-7660)
[»] chr7 (1 HSPs)
chr7 (177-233)||(1749288-1749343)
[»] chr2 (1 HSPs)
chr2 (179-235)||(14955424-14955479)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30506552 - 30506312
Alignment:
Q  1 tatttattcgatacaagtactatttaaacacaccatatcannnnnnnngtctctaatatcgatcctagttgtttagtgagagaaactatattttttcttt 100  Q
    ||||||||||| |||||||||||||||||| |||||||||          ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  30506552 tatttattcgacacaagtactatttaaacaaaccatatcatttttttc--ctctaatattgatcctagttgtttagtgagagaaactatattttctcttt 30506455  T
Q  101 aagttctatttgtcctttgttcatcgaaaatatgtggtttaggtcattttttgatctataatcac----taagccgcatttcttttttctctttctttca 196  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||    |||||||||||||||||||||||||||||||    
T  30506454 aagttctatttgtcctttgttcattgaaaatatgtggtttaggtcattttttga-ctgtaatcactaagtaagccgcatttcttttttctctttctttca 30506356  T
Q  197 attctaaatagatgatttacacatatatcaagttttttcctatg 240  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  30506355 attctaaataggtgattttcacatatatcaagttttttcctatg 30506312  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 36775916 - 36775861
Alignment:
Q  177 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 233  Q
    ||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||||||    
T  36775916 tcttttttccctttctttcaat-ctaaataaatgattttcacatacatcaagttttt 36775861  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 15492194 - 15492240
Alignment:
Q  188 tttctttcaattctaaatagatgatttacacatatatcaagttttttc 235  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  15492194 tttctttcaat-ctaaataaatgattttcacatatatcaagttttttc 15492240  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 47158139 - 47158194
Alignment:
Q  179 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 235  Q
    ||||||| ||||||||||||| ||||||  |||||| ||||||||||||||||||||    
T  47158139 ttttttcactttctttcaatt-taaataagtgatttccacatatatcaagttttttc 47158194  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 22305884 - 22305841
Alignment:
Q  74 tagtgagagaaactatattttttctttaagttctatttgtcctt 117  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||    
T  22305884 tagtgagagaaactatattttctctttaagttctctttttcctt 22305841  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 9713827 - 9713874
Alignment:
Q  187 ctttctttcaattctaaatagatgatttacacatatatcaagttttttc 235  Q
    |||||||||||| |||||||  |||||| ||||||||||||||||||||    
T  9713827 ctttctttcaat-ctaaataagtgatttccacatatatcaagttttttc 9713874  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Original strand, 28981067 - 28981123
Alignment:
Q  177 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagtttttt 234  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||||||||||| ||||    
T  28981067 tcttttttccctttctttcaat-ctaaataagtgatttccacatatatcaagtgtttt 28981123  T

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Target: scaffold0603 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 7568 - 7660
Alignment:
Q  138 tttaggtcattttttgatctataatcactaagccgcatttcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 233  Q
    ||||||||||||||||| ||| ||||||| | | |||  ||||||  | ||||||||||||| ||||||  || ||| ||||||||||||||||||    
T  7568 tttaggtcattttttgacctagaatcactcatctgca--tcttttacccctttctttcaatt-taaataagtggttttcacatatatcaagttttt 7660  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 1749343 - 1749288
Alignment:
Q  177 tcttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttt 233  Q
    ||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||||    
T  1749343 tcttttttccctttctttcaat-ctaaataagtgattttcacatacatcaagttttt 1749288  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 14955424 - 14955479
Alignment:
Q  179 ttttttctctttctttcaattctaaatagatgatttacacatatatcaagttttttc 235  Q
    ||||| |||||||||||||| |||||||  |||||| |||||| |||||||||||||    
T  14955424 tttttcctctttctttcaat-ctaaataagtgatttccacatacatcaagttttttc 14955479  T

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