View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10677_high_6 (Length: 227)

Name: NF10677_high_6
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10677_high_6
NF10677_high_6
[»] chr4 (6 HSPs)
chr4 (1-64)||(29599412-29599475)
chr4 (1-64)||(6779706-6779769)
chr4 (170-227)||(29599262-29599319)
chr4 (170-227)||(6779543-6779600)
chr4 (1-64)||(54035709-54035772)
chr4 (170-227)||(54035547-54035604)
[»] chr1 (4 HSPs)
chr1 (1-62)||(45135215-45135276)
chr1 (170-227)||(45135051-45135108)
chr1 (172-219)||(37086863-37086910)
chr1 (186-226)||(28431039-28431079)
[»] chr5 (5 HSPs)
chr5 (1-64)||(42206141-42206205)
chr5 (170-225)||(973380-973435)
chr5 (13-64)||(973541-973592)
chr5 (170-213)||(1397566-1397609)
chr5 (170-225)||(42205980-42206035)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29599475 - 29599412
Alignment:
Q  1 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtatctctagccgttcgcctcactagc 64  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29599475 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtacctctagccgttcgcctcactagc 29599412  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6779769 - 6779706
Alignment:
Q  1 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtatctctagccgttcgcctcactagc 64  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6779769 aagcaacagtccgaagcatgcaaaggtttcaaggtgggtacctctagccgttcgcctcactagc 6779706  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 29599319 - 29599262
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatccct 227  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  29599319 acttctttcttattatatatgattagggttctgcagcaggagatcgctctgcatccct 29599262  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 6779600 - 6779543
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatccct 227  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||    
T  6779600 acttctttcatattatatatgattagggttctacagcaggagatccctctgcatccct 6779543  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 54035772 - 54035709
Alignment:
Q  1 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtatctctagccgttcgcctcactagc 64  Q
    |||||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||||||    
T  54035772 aagcaacagtctgaagcgagcaaaggttttaaggtgggtacttctagccgttcgcctcactagc 54035709  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 54035604 - 54035547
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatccct 227  Q
    ||||||||||| ||||||||||||||||||| |||||| |||| ||||||||| ||||    
T  54035604 acttctttctttttatatatgattagggttctgcagcaagagacccctctgcacccct 54035547  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45135276 - 45135215
Alignment:
Q  1 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtatctctagccgttcgcctcacta 62  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45135276 aagcaacagtccgaagcatgcaaaggtttcaaggtgggtacctctagccgttcgcctcacta 45135215  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 45135108 - 45135051
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatccct 227  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  45135108 acttctttcttattatatataattagggttctgcagcaggagatccctctgcatccct 45135051  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 37086910 - 37086863
Alignment:
Q  172 ttctttcttattatatatgattagggttccgcagcaggagatccctct 219  Q
    ||||||||| |||||||||||||||||||  |||||||||| ||||||    
T  37086910 ttctttctttttatatatgattagggttctacagcaggagacccctct 37086863  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 28431039 - 28431079
Alignment:
Q  186 atatgattagggttccgcagcaggagatccctctgcatccc 226  Q
    ||||| || |||||| |||||||||||||||||||||||||    
T  28431039 atatgttttgggttctgcagcaggagatccctctgcatccc 28431079  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42206205 - 42206141
Alignment:
Q  1 aagcaacagtctgaagcatgcaaaggtttcaaggtgggtatct-ctagccgttcgcctcactagc 64  Q
    |||||||||||  |||||||||||||||||||| |||||| || |||||||||||||||||||||    
T  42206205 aagcaacagtccaaagcatgcaaaggtttcaagatgggtacctcctagccgttcgcctcactagc 42206141  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 973435 - 973380
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatcc 225  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  973435 acttatttcttactatatatgattagggttctgcagcaggagatccatctgcatcc 973380  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 973592 - 973541
Alignment:
Q  13 gaagcatgcaaaggtttcaaggtgggtatctctagccgttcgcctcactagc 64  Q
    ||||||||||||||||| |||||||||| || ||||||||||||||||||||    
T  973592 gaagcatgcaaaggttttaaggtgggtacctttagccgttcgcctcactagc 973541  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 1397566 - 1397609
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagat 213  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  1397566 acttctttcttattatatatgattagggttctgcagcaggagat 1397609  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 42206035 - 42205980
Alignment:
Q  170 acttctttcttattatatatgattagggttccgcagcaggagatccctctgcatcc 225  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||||||| |||||||    
T  42206035 acttctttcttattatatatgattaggattctgtggcaggagatccctatgcatcc 42205980  T

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