View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10677_low_1 (Length: 432)
Name: NF10677_low_1
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10677_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 235 - 419
Target Start/End: Complemental strand, 36238898 - 36238714
Alignment:
| Q |
235 |
caatattttttcatgcattttgtcaaggttggtaggttcaaggaagactactcatgcatcatcgacatcgtctgggtcgtcatcatcggcttcatcttct |
334 |
Q |
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| T |
36238898 |
caatattttttcatgcattttgttaaggttggtaggttcaaggaagactactcatgcatcatcgacatcgtctgggtcgtcatcatcggcttcatcttct |
36238799 |
T |
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| Q |
335 |
tcatcgtcgtactcatattccaggagagacaacaatcaaggaagcttctcttcctcgtgctcatcaacaattgttggttcttttt |
419 |
Q |
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| T |
36238798 |
tcatcgtcgtactcatattccaggagagacaacaatcaaggaagcttctcttcctcgtgctcatcaacagttgttggttcttttt |
36238714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 36239119 - 36238938
Alignment:
| Q |
14 |
aaattcttcttaaggctaaaatcaaaggaagcttctagtgccaacacttcatcaagggtcatgtattatggagaaacatcaattgcaattccctttgtat |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36239119 |
aaattcttcttaaggctaaaatcaaaggaagcttctagtgccaacgcttcatcaagggtcatgtattatggagaaagatcagttgcaattccctttgtat |
36239020 |
T |
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| Q |
114 |
gggaggcacaacctggtactcctaagcaccctttatctgaaacctctattcctccacttacacccccaccttcatattattc |
195 |
Q |
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| T |
36239019 |
gggaggcacaacctggtactcctaagcaccctttatctgaaacctctattcctccacttacacccccaccttcatattattc |
36238938 |
T |
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