View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10677_low_11 (Length: 223)

Name: NF10677_low_11
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10677_low_11
NF10677_low_11
[»] chr3 (8 HSPs)
chr3 (49-207)||(3221420-3221578)
chr3 (69-204)||(3721578-3721713)
chr3 (49-206)||(3200976-3201133)
chr3 (66-207)||(3198319-3198460)
chr3 (49-206)||(3322169-3322326)
chr3 (67-207)||(3310588-3310728)
chr3 (49-204)||(3303894-3304052)
chr3 (49-161)||(3357315-3357427)
[»] chr1 (3 HSPs)
chr1 (49-207)||(41947168-41947326)
chr1 (101-207)||(49386435-49386541)
chr1 (96-156)||(4255760-4255820)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 3221420 - 3221578
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaac 148  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3221420 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaagcttgttatcaaaaacatgcttagaaagagttgtttttccaagtcctcccataccaac 3221519  T
Q  149 cacagaaaccaacatgagctcattggttccctccaccaaacaactaaccaattcatctc 207  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3221520 cacagaaatcaacatgagctcatttgttccctccaccaaacaactaaccaattcatctc 3221578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 3721713 - 3721578
Alignment:
Q  69 caatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaaccacagaaaccaacatgagct 168  Q
    |||||||||||  ||||||| |||| |||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||| |  || |||    
T  3721713 caatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctaccacagaaacccatgtgcgct 3721614  T
Q  169 cattggttccctccaccaaacaactaaccaattcat 204  Q
    |||||| |||| ||||||||  ||||||||||||||    
T  3721613 cattggctccccccaccaaaagactaaccaattcat 3721578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 3201133 - 3200976
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaac 148  Q
    ||||||||| |||| | |||||||||||||  |||||||||| || ||| | |||||||||  ||| |||||| ||||| || | ||||||||| |||||    
T  3201133 aaactgtgacgaaatagcgacaatcaaagtagtttttcacaacctggttttgaaaaacatggctagcaagagtagttttcccgattcctcccatgccaac 3201034  T
Q  149 cacagaaaccaacatgagctcattggttccctccaccaaacaactaaccaattcatct 206  Q
     ||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||    
T  3201033 aacagaaaccaacatgagctcactggttccccccaccaagcatctaaccaattcatct 3200976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 3198319 - 3198460
Alignment:
Q  66 cgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaaccacagaaaccaacatga 165  Q
    |||||||||||||| ||||||||    |  ||||||||||||| ||||| |||||| ||||| || ||||||||||| ||||| |||||||||||||||     
T  3198319 cgacaatcaaagtggtttttcacctcatgtttatcaaaaacatacttagcaagagtcgttttaccgagtcctcccatgccaacaacagaaaccaacatgc 3198418  T
Q  166 gctcattggttccctccaccaaacaactaaccaattcatctc 207  Q
    ||||| ||||||||||||||||  | ||||||||||||||||    
T  3198419 gctcactggttccctccaccaagaatctaaccaattcatctc 3198460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 49 - 206
Target Start/End: Original strand, 3322169 - 3322326
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaac 148  Q
    ||||||| |||||| | ||| ||| ||| || | |||||| |||| ||||| |||||||||||||| ||||||||||||||| ||||||||||| || ||    
T  3322169 aaactgttatgaaagagcgataattaaattggtctttcaccaactggttattaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctac 3322268  T
Q  149 cacagaaaccaacatgagctcattggttccctccaccaaacaactaaccaattcatct 206  Q
    ||||| || ||||||  |||||||||||||| | ||||||| ||| ||||||||||||    
T  3322269 cacagtaatcaacatccgctcattggttcccccaaccaaaccacttaccaattcatct 3322326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 3310588 - 3310728
Alignment:
Q  67 gacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaaccacagaaaccaacatgag 166  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||| ||||| |||||| |||||||| ||||||||||| ||||| ||||||| |||||| ||    
T  3310588 gacaatcaaagtgctctttcacatactggttattaaaaacatacttagcaagagtcgtttttccaagtcctcccatgccaacaacagaaatcaacatcag 3310687  T
Q  167 ctcattggttccctccaccaaacaactaaccaattcatctc 207  Q
     ||| |||||||   ||||||| |||||| |||||||||||    
T  3310688 gtcactggttccggacaccaaataactaatcaattcatctc 3310728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 3303894 - 3304052
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccatac---c 145  Q
    ||||||| |||||| | || |||||||||||  ||||||| || | |||||||||||||||||||| ||||||||||||||| ||||||||||| |   |    
T  3303894 aaactgttatgaaagagcggcaatcaaagtggcttttcaccaaatcgttatcaaaaacatgcttagcaagagttgtttttccgagtcctcccatgcctac 3303993  T
Q  146 aaccacagaaaccaacatgagctcattggttccctccaccaaacaactaaccaattcat 204  Q
     ||||||||||||||| || ||||||||  |||  ||||||||| || || ||||||||    
T  3303994 caccacagaaaccaacgtgtgctcattgtctccacccaccaaacgacgaatcaattcat 3304052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 3357315 - 3357427
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaac 148  Q
    ||||||| |||||| | || |||||||||||  ||||||| |||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| || |     
T  3357315 aaactgttatgaaagagcggcaatcaaagtggcttttcaccaactcgttatcaaagacatgcttagcaagagttgtttttccgagtcctcccatgcctag 3357414  T
Q  149 cacagaaaccaac 161  Q
    |||||||||||||    
T  3357415 cacagaaaccaac 3357427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 41947168 - 41947326
Alignment:
Q  49 aaactgtgatgaaacatcgacaatcaaagtgctttttcacaaacttgttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaac 148  Q
    |||||||||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  41947168 aaactgtgatgaaacacctacaatcaaagtgcttttttacaagcttgttatcaaaaacatgcttagaaagagttgtttttcctagtcct---ttaccaac 41947264  T
Q  149 cacagaaaccaacatgagctcattggttccctccaccaaacaacta---accaattcatctc 207  Q
    |||| |||| |||||||||||||||||||||| |||||| ||||||   |||||||||||||    
T  41947265 cacaaaaacaaacatgagctcattggttcccttcaccaatcaactaattaccaattcatctc 41947326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 101 - 207
Target Start/End: Original strand, 49386435 - 49386541
Alignment:
Q  101 aaaaacatgcttagaaagagttgtttttcctagtcctcccataccaaccacagaaaccaacatgagctcattggttccctccaccaaacaactaaccaat 200  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  49386435 aaaaacatgcttagaaagagttgtttttccaagtcctcctataccaaacacataaaccaacatgagcttattggttccctccaccaaacaactaaccaat 49386534  T
Q  201 tcatctc 207  Q
    |||||||    
T  49386535 tcatctc 49386541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 4255820 - 4255760
Alignment:
Q  96 ttatcaaaaacatgcttagaaagagttgtttttcctagtcctcccataccaaccacagaaa 156  Q
    |||||||||||||  |||| |||||||||||| || ||||| ||||| |||||||| ||||    
T  4255820 ttatcaaaaacatttttagcaagagttgttttcccaagtccccccattccaaccaccgaaa 4255760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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