View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10677_low_2 (Length: 416)
Name: NF10677_low_2
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10677_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 182 - 402
Target Start/End: Complemental strand, 12140482 - 12140262
Alignment:
| Q |
182 |
atttatttgtcgttttcaaagttcattgtgacattaataactattgttttgtcaataacatgcttaaccatttagtgtatagagaaatatgtggaatcag |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12140482 |
atttatttgtcgttttcaaagttcattgtgacattaataactattgttttgtcaataacatgcttaaccatttagtgtatagagaaatatgtggaatcag |
12140383 |
T |
|
| Q |
282 |
ataacaaccaacaatttaagggtgcaataggaaaagacataacttcatcaaaagtaacagtttattgggatttttggtacgtgtaaataaccttaaaaca |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12140382 |
ataacaaccaacaatttaagggtgcaataggaaaagacataacttcatcaaaagtaacagtttattgggatttttggtacgtgtaaatacacttaaaaca |
12140283 |
T |
|
| Q |
382 |
acaactatacaagaatttatt |
402 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12140282 |
acaactatacaagaatttatt |
12140262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 11061000 - 11061063
Alignment:
| Q |
173 |
tttgtttctatttatttgtcgttttcaaagttcattgtgacattaataactattgttttgtcaataa |
239 |
Q |
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|||||| ||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||| |
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| T |
11061000 |
tttgttcctatttatttgtcgttttcaaagttcaatgtaatattaat---tattgttttgtcaataa |
11061063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 4756840 - 4756894
Alignment:
| Q |
167 |
aaaaactt-tgtttctatttatttgtcgttttcaaagttcattgtgacattaata |
220 |
Q |
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| T |
4756840 |
aaaaacttgtgttcctacttatttgtcgttttcaaagttcaatgtaacattaata |
4756894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 3035801 - 3035603
Alignment:
| Q |
8 |
aagcagagagtttctttagctagggctgtatactcaaattcagatgtatatatatttgatgatcctttgagtgctcttgatgctcatattgctcaagagg |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035801 |
aagcaaagagtttctttagctagggctgtatactcaaattcagatgtatatatatttgatgatcctttgagtgctcttgatgctcatattgctcaagagg |
3035702 |
T |
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| Q |
108 |
tatcattcttatcaaactcaaaaacacaagtcccttttatgatataccctcttttggataaaaactttgtttctatttatttgtcgttttcaaagttca |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3035701 |
tatcattcttatcaaactcaaaaacacaagtcccttttatgatatagcctcttttggataaaaactttgtttctatttatttgtcgttttcaaagttca |
3035603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 3010415 - 3010313
Alignment:
| Q |
8 |
aagcagagagtttctttagctagggctgtatactcaaattcagatgtatatatatttgatgatcctttgagtgctcttgatgctcatattgctcaagagg |
107 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3010415 |
aagcaaagagtttctttagctagggctgtatattcaaattcagatgtatatatatttgatgatcctttgagtgctcttgatgctcatattgctcaagagg |
3010316 |
T |
|
| Q |
108 |
tat |
110 |
Q |
| |
|
||| |
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|
| T |
3010315 |
tat |
3010313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22750328 - 22750287
Alignment:
| Q |
54 |
tatatatatttgatgatcctttgagtgctcttgatgctcata |
95 |
Q |
| |
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||||| ||||||||||||| || ||||||||||||||||||| |
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| T |
22750328 |
tatatctatttgatgatccgtttagtgctcttgatgctcata |
22750287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 34750663 - 34750711
Alignment:
| Q |
158 |
cttttggataaaaactttgtttctatttatttgtcgttttcaaagttca |
206 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| |||||||||||||||||| |
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|
| T |
34750663 |
cttttgcataaaaattttgtttctaattaactgtcgttttcaaagttca |
34750711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 55430536 - 55430484
Alignment:
| Q |
158 |
cttttggataaaaactttgtttctatttatttgtcgttttcaaagttcattgt |
210 |
Q |
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|
|||||| ||||||| |||||||||| ||| |||||||||||||||||||||| |
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|
| T |
55430536 |
cttttgcataaaaaatttgtttctaattaactgtcgttttcaaagttcattgt |
55430484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 17213420 - 17213359
Alignment:
| Q |
173 |
tttgtttctatttatttgtcgttttcaaagttcattgtgacattaataactattgttttgtcaat |
237 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| || ||| | ||||||||||||| ||||| |
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| T |
17213420 |
tttgtttctatttatttgtagttttcaaagttcaatg---catcattaactattgttttatcaat |
17213359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 10562508 - 10562475
Alignment:
| Q |
173 |
tttgtttctatttatttgtcgttttcaaagttca |
206 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
10562508 |
tttgtttctatttatttgtcgttttcaatgttca |
10562475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 46392657 - 46392624
Alignment:
| Q |
173 |
tttgtttctatttatttgtcgttttcaaagttca |
206 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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|
| T |
46392657 |
tttgttcctatttatttgtcgttttcaaagttca |
46392624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 40927143 - 40927191
Alignment:
| Q |
158 |
cttttggataaaaactttgtttctatttatttgtcgttttcaaagttca |
206 |
Q |
| |
|
|||||| ||||||| |||||||||| ||| |||||||||||||| |||| |
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|
| T |
40927143 |
cttttgcataaaaattttgtttctaattaattgtcgttttcaaaattca |
40927191 |
T |
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