View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10677_low_3 (Length: 390)
Name: NF10677_low_3
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10677_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 340
Target Start/End: Complemental strand, 34739613 - 34739451
Alignment:
| Q |
175 |
tatattgaatttaaaatgatttaaatatacaaataattggaatcattaacaaacatatcatattaatgtttaaaatattttaaccaaaaaccgttgattt |
274 |
Q |
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| T |
34739613 |
tatattgaatttaaaatgatttaaattcaaaaataaa---aattattaacaagcataccatgttaatattttaaatcttttagccaagaaatgttgattt |
34739517 |
T |
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| Q |
275 |
tagttttccatctaaataacctatcaaaacttggattacaatagtagaaattaatgtgtatagtat |
340 |
Q |
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| T |
34739516 |
tagttttccgtctaaataatctatcaaaacatggattataatagtagcaatcaatatgtatagtat |
34739451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 11679835 - 11679791
Alignment:
| Q |
18 |
cctatatatttttatacttttatagaggagaaagaattaaaagtt |
62 |
Q |
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| T |
11679835 |
cctatatatttttatacttttatagaggagaaagaattataagtt |
11679791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 11679777 - 11679736
Alignment:
| Q |
52 |
aattaaaagttggtttcttcaacaactcatctactactttta |
93 |
Q |
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| T |
11679777 |
aattaaaagttggtttcttgaacaactaatctactactttta |
11679736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 267 - 352
Target Start/End: Complemental strand, 26454794 - 26454709
Alignment:
| Q |
267 |
gttgattttagttttccatctaaataacctatcaaaacttggattacaatagtagaaattaatgtgtatagtatgcataaataaaa |
352 |
Q |
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| T |
26454794 |
gttgattttagttttccacctaaataatctcttaaaacatggattacaatagtagaaattaatatgtatagtatgcataaataaaa |
26454709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 235
Target Start/End: Original strand, 16972274 - 16972365
Alignment:
| Q |
140 |
tattaaataaggttgtgtgcacggacatatacatatatattgaatttaaaatgatttaaatatacaaataattggaatcattaacaaacatatcat |
235 |
Q |
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| T |
16972274 |
tattaaataaggttttgtgcacggacaaatataagcatattagatttataatgatttaaatttacaaataa----aatcattaacaaacatatcat |
16972365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 20755758 - 20755703
Alignment:
| Q |
269 |
tgattttagttttccatctaaataacctatcaaaacttggattacaatagtagaaa |
324 |
Q |
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| T |
20755758 |
tgattttagttttccgcgtaaataagctctctaaacttggattacaatagtagaaa |
20755703 |
T |
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