View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10677_low_5 (Length: 267)
Name: NF10677_low_5
Description: NF10677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10677_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 44409688 - 44409922
Alignment:
| Q |
18 |
tgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagt |
117 |
Q |
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| T |
44409688 |
tgttcaagttccatatcaatctaagggtaaaggagggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagt |
44409787 |
T |
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| Q |
118 |
acattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacct |
217 |
Q |
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| T |
44409788 |
acattttacaccatgaagaatgataactctggttctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacct |
44409887 |
T |
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| Q |
218 |
aagtagtatatatgctgcaaatcaaaatgctaccttcat |
256 |
Q |
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| T |
44409888 |
aagtag----tatgctgcaaatcaaaatgctaccttcat |
44409922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
150 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
191 |
Q |
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| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
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