View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10678_high_13 (Length: 228)

Name: NF10678_high_13
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10678_high_13
NF10678_high_13
[»] chr8 (5 HSPs)
chr8 (1-153)||(8543286-8543441)
chr8 (1-38)||(23115452-23115489)
chr8 (1-35)||(42735561-42735595)
chr8 (1-33)||(7507183-7507215)
chr8 (1-41)||(24502055-24502095)
[»] scaffold0037 (1 HSPs)
scaffold0037 (1-39)||(100095-100133)
[»] chr7 (7 HSPs)
chr7 (1-39)||(40996934-40996972)
chr7 (1-38)||(44343680-44343717)
chr7 (1-36)||(8078283-8078318)
chr7 (1-40)||(30440680-30440719)
chr7 (1-36)||(34008903-34008938)
chr7 (1-38)||(34695117-34695154)
chr7 (1-33)||(973074-973106)
[»] chr3 (8 HSPs)
chr3 (1-39)||(29449145-29449183)
chr3 (1-38)||(996370-996407)
chr3 (1-35)||(12734125-12734159)
chr3 (1-35)||(20498097-20498131)
chr3 (1-34)||(3206481-3206514)
chr3 (1-34)||(22057651-22057684)
chr3 (2-34)||(33996777-33996809)
chr3 (1-40)||(35337616-35337656)
[»] chr2 (7 HSPs)
chr2 (1-39)||(9120053-9120091)
chr2 (1-36)||(31170911-31170946)
chr2 (1-39)||(12407265-12407303)
chr2 (1-35)||(24776244-24776278)
chr2 (1-34)||(16269581-16269614)
chr2 (1-34)||(20605042-20605075)
chr2 (1-33)||(22552050-22552082)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-38)||(102021-102058)
[»] chr1 (6 HSPs)
chr1 (1-41)||(28824657-28824697)
chr1 (1-36)||(953699-953734)
chr1 (1-35)||(730030-730064)
chr1 (1-35)||(19452135-19452169)
chr1 (1-35)||(21222029-21222063)
chr1 (1-35)||(45760295-45760329)
[»] chr6 (2 HSPs)
chr6 (1-36)||(2301022-2301057)
chr6 (1-35)||(6197762-6197796)
[»] chr5 (3 HSPs)
chr5 (1-36)||(7016981-7017016)
chr5 (1-35)||(21146955-21146989)
chr5 (1-35)||(43319134-43319168)
[»] chr4 (7 HSPs)
chr4 (1-36)||(22201901-22201936)
chr4 (1-36)||(30009962-30009997)
chr4 (1-36)||(42786653-42786688)
chr4 (1-35)||(1044697-1044731)
chr4 (1-38)||(40537430-40537467)
chr4 (1-33)||(24131257-24131289)
chr4 (1-33)||(28541587-28541619)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-39)||(39138-39176)
[»] scaffold0151 (1 HSPs)
scaffold0151 (1-33)||(38805-38837)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8543441 - 8543286
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaagttcgtagccaataaaataggaattaatgatcctcgggggaacctctgtaggaagtaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  8543441 taaaatcccttagaatcatgatctaatacacccccttaagttcgtaggcaataaaataggaatagatgatcctcgagggaacctctgtaggaagtaatgt 8543342  T
Q  101 ttggttgagcaatagacacaa---ttgcataaatttgattcttttaagagttattt 153  Q
    |||||||||||||||||||||   |||||| |||||||||||||||||||||||||    
T  8543341 ttggttgagcaatagacacaatatttgcatcaatttgattcttttaagagttattt 8543286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23115452 - 23115489
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23115452 taaaatcccttagaatcatgatccaatacaccccctta 23115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42735561 - 42735595
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  42735561 taaaatcccttagaatcatgatccaatacaccccc 42735595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7507183 - 7507215
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  7507183 taaaatcccttagaatcatgatccaatacaccc 7507215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24502055 - 24502095
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaagt 41  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  24502055 taaaatcctttagaatcatgatccaatacacccccctaagt 24502095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 100133 - 100095
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  100133 taaaatcccttagaatcatgatccaatacacccccttaa 100095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40996934 - 40996972
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  40996934 taaaatcccttagaatcatgatccaatacacccccttaa 40996972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44343680 - 44343717
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  44343680 taaaatcccttagaatcatgatccaatacaccccctta 44343717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 8078318 - 8078283
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  8078318 taaaatcccttagaatcatgatccaatacaccccct 8078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30440719 - 30440680
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaag 40  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  30440719 taaaatcccttagaatcatgatccaatacacccccctaag 30440680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34008938 - 34008903
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  34008938 taaaatcccttagaatcatgatccaatacaccccct 34008903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34695154 - 34695117
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  34695154 taaaatcccttagaatcatgattcaatacaccccctta 34695117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 973106 - 973074
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  973106 taaaatcccttagaatcatgatccaatacaccc 973074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29449145 - 29449183
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  29449145 taaaatcccttataatcatgatctaatacacccccttaa 29449183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 996370 - 996407
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  996370 taaaatcccttagaatcatgatccaatacaccccctta 996407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12734125 - 12734159
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12734125 taaaatcccttagaatcatgatccaatacaccccc 12734159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20498131 - 20498097
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  20498131 taaaatcccttagaatcatgatccaatacaccccc 20498097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3206481 - 3206514
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  3206481 taaaatcccttagaatcatgatccaatacacccc 3206514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22057684 - 22057651
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  22057684 taaaatcccttagaatcatgatccaatacacccc 22057651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 33996777 - 33996809
Alignment:
Q  2 aaaatcccttagaatcatgatctaatacacccc 34  Q
    |||||||||||||||||||||| ||||||||||    
T  33996777 aaaatcccttagaatcatgatccaatacacccc 33996809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35337656 - 35337616
Alignment:
Q  1 taaaatcccttagaatcatga-tctaatacacccccttaag 40  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  35337656 taaaatcccttagaatcatgattcaaatacacccccttaag 35337616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9120091 - 9120053
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  9120091 taaaatcccttagaatcatgatccaatacacccccttaa 9120053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31170911 - 31170946
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  31170911 taaaatcccttagaatcatgatccaatacaccccct 31170946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12407303 - 12407265
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  12407303 taaaatctcttagaatcatgatccaatacacccccttaa 12407265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 24776278 - 24776244
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  24776278 taaaatcccttagaatcatgatccaatacaccccc 24776244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16269614 - 16269581
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  16269614 taaaatcccttagaatcatgatccaatacacccc 16269581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20605075 - 20605042
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  20605075 taaaatcccttagaatcatgatccaatacacccc 20605042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22552050 - 22552082
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  22552050 taaaatcccttagaatcatgatccaatacaccc 22552082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 102058 - 102021
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  102058 taaaatcccttagaatcatgatctaatacacccgctta 102021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28824657 - 28824697
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaagt 41  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  28824657 taaaatcccttagaatcatgatccaatacaccccctaaagt 28824697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 953734 - 953699
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  953734 taaaatcccttagaatcatgatccaatacaccccct 953699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 730064 - 730030
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  730064 taaaatcccttagaatcatgatccaatacaccccc 730030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19452135 - 19452169
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  19452135 taaaatcccttagaatcatgatccaatacaccccc 19452169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21222063 - 21222029
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  21222063 taaaatcccttagaatcatgatccaatacaccccc 21222029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 45760295 - 45760329
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  45760295 taaaatcccttagaatcatgatccaatacaccccc 45760329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2301022 - 2301057
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  2301022 taaaatcccttagaatcatgatccaatacaccccct 2301057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6197762 - 6197796
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  6197762 taaaatcccttagaatcatgatccaatacaccccc 6197796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7016981 - 7017016
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7016981 taaaatcccttagaatcatgatccaatacaccccct 7017016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21146989 - 21146955
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  21146989 taaaatcccttagaatcatgatccaatacaccccc 21146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 43319168 - 43319134
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  43319168 taaaatcccttagaatcatgatccaatacaccccc 43319134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22201936 - 22201901
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22201936 taaaatcccttagaatcatgatccaatacaccccct 22201901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30009962 - 30009997
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30009962 taaaatcccttagaatcatgatccaatacaccccct 30009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 42786688 - 42786653
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccct 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42786688 taaaatcccttagaatcatgatccaatacaccccct 42786653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1044731 - 1044697
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  1044731 taaaatcccttagaatcatgatccaatacaccccc 1044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40537430 - 40537467
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccccctta 38  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  40537430 taaaatcccttacaatcatgatccaatacaccccctta 40537467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24131257 - 24131289
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  24131257 taaaatcccttagaatcatgatccaatacaccc 24131289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28541619 - 28541587
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  28541619 taaaatcccttagaatcatgatccaatacaccc 28541587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39138 - 39176
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacacccccttaa 39  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  39138 taaaatccattagaatcatgatccaatacacccccttaa 39176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38805 - 38837
Alignment:
Q  1 taaaatcccttagaatcatgatctaatacaccc 33  Q
    ||||||||||||||||||||||| |||||||||    
T  38805 taaaatcccttagaatcatgatccaatacaccc 38837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University