View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10678_high_17 (Length: 218)
Name: NF10678_high_17
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 54848134 - 54848334
Alignment:
| Q |
1 |
agcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaaccaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54848134 |
agcaggagaggaggattatcaaggtattactcagggaaagcaagatcatttgtttgtatggaagatgtacattcggttgaggatttgaagaaaccaaaac |
54848233 |
T |
|
| Q |
101 |
atcctgatgcaaagaaaagaaagaaacattctcatagaaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactcaattaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54848234 |
atcctgatgcaaagaaaagaaagaaacattctcataggaaggaattcatcaaccttaatccatatcattgtcgaagggcgccaagttgcactcaattaac |
54848333 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
54848334 |
t |
54848334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University