View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_high_3 (Length: 394)
Name: NF10678_high_3
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 5810595 - 5810225
Alignment:
| Q |
1 |
agccgaagctagtggagataccagagcatggaatagcctgttcatgcgctctgatacagtatgtttctttatggttaatgaatggaaagctatgattcta |
100 |
Q |
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| T |
5810595 |
agccgaagctagtggagataccagagcatggaatagcctgttcatgcgccctgatacagtatgtttctttatggttaatgaattgaaagctatgattcta |
5810496 |
T |
|
| Q |
101 |
ttatttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtctataatttctgtagaaaatcacaacttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810495 |
ttatttcatccttttttagtagccaatgttgcaataatatattgaagttctgaataatgtttattttgtctataatttctgtagaaaatcacaacttgtt |
5810396 |
T |
|
| Q |
201 |
gtttgttttcaacttttcacannnnnnnnnnatattttatgtgttgctttaggtgcttttaatttgttggaaaatgaaagacttactggacaacataaaa |
300 |
Q |
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| T |
5810395 |
gtttgttttcaacttttcaca--ttttttttatattttatgtgttgctctaggtgcttttaattttttggaaaatgaaagacttactggacaacataaaa |
5810298 |
T |
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| Q |
301 |
ctacttccatgtttgatttgaagaataatggttgtctaacaaaatgaaacatccaattttcttacttacacccttt |
376 |
Q |
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| T |
5810297 |
ctacttccatgtttgatttgaag---attggttgtctaacaaaatgaaacatccaattttcttacttacacccttt |
5810225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 38604250 - 38604444
Alignment:
| Q |
5 |
gaagctagtggagataccagagcatggaatagcctgttcatgcgctctgatacagtatgtttctttatggttaatgaatggaaagctatgattctattat |
104 |
Q |
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| T |
38604250 |
gaagctaaaggagataccagagcatggaatagtctgttcatgcgccaggatacagtatgtttccttatgatga---aattgaaagctatgattatattat |
38604346 |
T |
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| Q |
105 |
ttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--ataatttct-gtagaaaatcacaacttgt |
199 |
Q |
| |
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|||||||||||| |||||||||| ||| |||| | ||||| | ||||||||||| || |||| ||| ||| ||||| ||||||| ||||||||||| |
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| T |
38604347 |
ttcatcctttttgagtagccaattttgcaatagttcattgatgctctgaataatgcttgttttatcttcatattttctagtagaaagtcacaacttgt |
38604444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 37740694 - 37740501
Alignment:
| Q |
5 |
gaagctagtggagataccagagcatggaatagcctgttcatgcgctctgatacagtatgtttctttatggttaatgaatggaaagctatgattctattat |
104 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | | | ||| |||| |||||||||||||| |
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| T |
37740694 |
gaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgatga---aattgaaatttatgattctattat |
37740598 |
T |
|
| Q |
105 |
ttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--ataatttctgtagaaaatcacaacttgt |
199 |
Q |
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|||||||||||| ||| |||||| || |||| | ||| | ||| ||||||||| ||||||| ||| ||| ||||| |||||| ||||||||||| |
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| T |
37740597 |
ttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcatattttctatagaaagtcacaacttgt |
37740501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 37756905 - 37756712
Alignment:
| Q |
5 |
gaagctagtggagataccagagcatggaatagcctgttcatgcgctctgatacagtatgtttctttatggttaatgaatggaaagctatgattctattat |
104 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | | | ||| |||| |||||||||||||| |
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| T |
37756905 |
gaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgatga---aattgaaatttatgattctattat |
37756809 |
T |
|
| Q |
105 |
ttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--ataatttctgtagaaaatcacaacttgt |
199 |
Q |
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| T |
37756808 |
ttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcatattttctatagaaagtcacaacttgt |
37756712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 37762653 - 37762460
Alignment:
| Q |
5 |
gaagctagtggagataccagagcatggaatagcctgttcatgcgctctgatacagtatgtttctttatggttaatgaatggaaagctatgattctattat |
104 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | | | ||| |||| |||||||||||||| |
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| T |
37762653 |
gaagctaaaggagataccagagcatggaatagtctgttcatgcgccctgatacagtatgtttccttacgatga---aattgaaatttatgattctattat |
37762557 |
T |
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| Q |
105 |
ttcatccttttttagtagccaatgttgaaataatatattgaagttctgaataatgtttattttgtct--ataatttctgtagaaaatcacaacttgt |
199 |
Q |
| |
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|||||||||||| ||| |||||| || |||| | ||| | ||| ||||||||| ||||||| ||| ||| ||||| |||||| ||||||||||| |
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| T |
37762556 |
ttcatcctttttgagttgccaatttttcaatagttcattcatgttttgaataatgcttattttatcttcatattttctatagaaagtcacaacttgt |
37762460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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