View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10678_high_9 (Length: 249)
Name: NF10678_high_9
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_high_9 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0369 (1 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0779 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 15537944 - 15538185
Alignment:
| Q |
8 |
agcagagaagcaacaaacagtttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537944 |
agcaaagaagcaacaaacagtttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
15538043 |
T |
|
| Q |
108 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccagattgctcttcatatagcatctaatccggttttccatgagaggacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15538044 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccagagtgctcttcatatagcatctaatccggttttccatgagaggacaa |
15538143 |
T |
|
| Q |
208 |
aacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15538144 |
aacacctagaaatagattgtcaccttgtgcgtgaaaaggttc |
15538185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 10595777 - 10595823
Alignment:
| Q |
183 |
aatccggttttccatgagaggacaaaacacctagaaatagattgtca |
229 |
Q |
| |
|
|||||||| || ||| |||||||||||||||| |||||||||||||| |
|
|
| T |
10595777 |
aatccggtctttcataagaggacaaaacaccttgaaatagattgtca |
10595823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 17388816 - 17389057
Alignment:
| Q |
8 |
agcagagaagcaacaaacagtttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17388816 |
agcaaagaagcaacaaacagtttccagatcctcctctgaagcataatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
17388915 |
T |
|
| Q |
108 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccagattgctcttcatatagcatctaatccggttttccatgagaggacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17388916 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccagattgctcttcatatagcatctaatctggttttccatgagaggacaa |
17389015 |
T |
|
| Q |
208 |
aacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17389016 |
aacacctagaaatagattgtcaccttgtgcgtgaaaaggttc |
17389057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 9844982 - 9844891
Alignment:
| Q |
138 |
ccagttatctactgtgacaaccagattgctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtca |
229 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||||||||||| |||| || || |||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
9844982 |
ccagttatatactgtgacaatcaaagcgctcttcatatagcagctaaccctgtgttccatgaacgcacaaaacacttagaaatagattgtca |
9844891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 13977632 - 13977686
Alignment:
| Q |
181 |
ctaatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgt |
235 |
Q |
| |
|
||||||| || ||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
13977632 |
ctaatccagtattccatgagaggacaaatcatgtagaaatagattgtcacgttgt |
13977686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 14278 - 14037
Alignment:
| Q |
8 |
agcagagaagcaacaaacagtttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
107 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14278 |
agcaaagaagcaaccaacagtttccagatcctcttctgaagcggaatatagggctctctcttctgccacatgtgagctgcaatggttgctctatttactt |
14179 |
T |
|
| Q |
108 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccagattgctcttcatatagcatctaatccggttttccatgagaggacaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14178 |
gcagatttgaaggttaattgcagtaagcttccagttatctactgtgacaaccatagtgctattcttatagcatctaatccggttttacatgagaggacaa |
14079 |
T |
|
| Q |
208 |
aacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14078 |
aacacctagaaatagattgtcaccttgtgcgtgaaaaggttc |
14037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 29156117 - 29156201
Alignment:
| Q |
165 |
gctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||| |||||||| || |||||||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29156117 |
gctctacatatagcctcaaatccggtatttcatgaacggacaaaacacatagaaatagattgtcaccttgttcgcgaaaaggttc |
29156201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 25574004 - 25573931
Alignment:
| Q |
28 |
tttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctat |
101 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
25574004 |
tttcaagatcttcttcagaagctgaatacagagctctctccactgccacatgtgagcttcagtggttgctctat |
25573931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 12147778 - 12147726
Alignment:
| Q |
183 |
aatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgt |
235 |
Q |
| |
|
||||| ||||||||||| || ||||||||| ||||||||||||| ||| |||| |
|
|
| T |
12147778 |
aatccagttttccatgaaagaacaaaacacttagaaatagattgccactttgt |
12147726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 249
Target Start/End: Complemental strand, 15163093 - 15163009
Alignment:
| Q |
165 |
gctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||| |||||||| || |||||||| || ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15163093 |
gctctacatatagcctcaaatccggtatttcatgaacggacaaaacacatagaaatagattgtcaccttgttcgcgaaaaggttc |
15163009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26359647 - 26359574
Alignment:
| Q |
28 |
tttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctat |
101 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
26359647 |
tttcaagatcttcttcagaagctgaatacagagctctctccactgccacatgtgagcttcagtggttgctctat |
26359574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 18497983 - 18497910
Alignment:
| Q |
28 |
tttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctat |
101 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||| || ||||| |||||| |
|
|
| T |
18497983 |
tttcaagatcttcttcagaagctgaatacagagctctctccactgccacatgtgagcttcagtggttactctat |
18497910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 31482597 - 31482533
Alignment:
| Q |
171 |
catatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgt |
235 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||| || ||||| ||||||||||| ||| |||| |
|
|
| T |
31482597 |
catatagctgctaatcctgtttttcatgagaggaccaagcaccttgaaatagattgccacattgt |
31482533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 10734087 - 10734171
Alignment:
| Q |
165 |
gctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtcaccttgtgcgcgaaaaggttc |
249 |
Q |
| |
|
||||| |||||||| || |||||||| || ||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
10734087 |
gctctacatatagcctcaaatccggtatttcatgaacggacaaaacacatagaaataaattgtcaccttgttcgcgaaaaggttc |
10734171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0779 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0779
Description:
Target: scaffold0779; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 5912 - 5985
Alignment:
| Q |
28 |
tttccagatcctcttctgaagcagaatatagggctctctcttctgccacatgtgagctgcaatggttgctctat |
101 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
5912 |
tttcaagatcttcttcagaagctgaatacagagctctctccactgccacatgtgagcttcaatggttgctctat |
5985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 95 - 6
Alignment:
| Q |
140 |
agttatctactgtgacaaccagattgctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtca |
229 |
Q |
| |
|
|||||| ||||||||||| || | ||||||||||||||| |||| || || |||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
95 |
agttatatactgtgacaatcaaagcgctcttcatatagcagctaaccctgtgttccatgaacgcacaaaacacttagaaatagattgtca |
6 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 46141697 - 46141746
Alignment:
| Q |
174 |
atagcatctaatccggttttccatgagaggacaaaacacctagaaataga |
223 |
Q |
| |
|
||||| || |||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
46141697 |
atagcctccaatccggtgtttcatgagaggacaaaacaccttgaaataga |
46141746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 33834858 - 33834910
Alignment:
| Q |
178 |
catctaatccggttttccatgagaggacaaaacacctagaaatagattgtcac |
230 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
33834858 |
catcaaatccagtttttcatgagaggacaaaacacatagaagttgattgtcac |
33834910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 28065027 - 28064971
Alignment:
| Q |
174 |
atagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtcac |
230 |
Q |
| |
|
|||||| |||||| || || |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
28065027 |
atagcagctaatctagtgtttcatgagagaacaaaacacttagaaatagattgtcac |
28064971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 18432181 - 18432117
Alignment:
| Q |
165 |
gctcttcatatagcatctaatccggttttccatgagaggacaaaacacctagaaatagattgtca |
229 |
Q |
| |
|
||||||||||| || || ||||| || || |||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
18432181 |
gctcttcatattgcttccaatcctgtgtttcatgagagaacaaagcaccttgaaatagattgtca |
18432117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University