View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_1 (Length: 521)
Name: NF10678_low_1
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 39956855 - 39956361
Alignment:
| Q |
20 |
caccaccacttcttatacacccttttgtaagttctatacttcaatcataaacttcctcaagaacatttctctctctcggacacatttcattaagaactgc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956855 |
caccaccacttcttatacacccttttgtaagttctatacttcaatcataaacttcctcaagaacatttctctctctcggacacatttcattaagaactgc |
39956756 |
T |
|
| Q |
120 |
aaaaagagtctatcataaattaattaatttt-atctatcatcatttatggcttccctctggtcattctcatcaatattcctagccttaatagcatgcaat |
218 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956755 |
aaaaagagtacatcataaattaattaatttttatctatcatcatttatggcttccttttggtcattctcatcaatattcctagccttaatagcatgcaat |
39956656 |
T |
|
| Q |
219 |
tgttcattagctttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956655 |
tgttcattagctttggcttctgcaaaaaccatgcatatttcaacaatctcagcagcaccaactacattaccagaagctcctctcttttctcctgcaatgt |
39956556 |
T |
|
| Q |
319 |
caccagatatggagccactgtttccttcccctggaggagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956555 |
caccagatatggagccactgtttccttcccctggaggagttgcttactctccatcggattcttcattaccaacaattccttcaagtcctagccctccaaa |
39956456 |
T |
|
| Q |
419 |
tccagatatctcaactcatcaaggtcctgtttcggcttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956455 |
tccagatatctcaactcatcaaggtcctgtttcggcttttccaccatccgagtctatgccaccggctttaggcccttcttctcagggttcatctc |
39956361 |
T |
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