View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10678_low_13 (Length: 356)

Name: NF10678_low_13
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10678_low_13
NF10678_low_13
[»] chr6 (3 HSPs)
chr6 (9-307)||(34380162-34380457)
chr6 (9-239)||(15517518-15517748)
chr6 (260-307)||(15517766-15517813)
[»] chr8 (2 HSPs)
chr8 (22-311)||(7485057-7485342)
chr8 (260-311)||(40225433-40225484)
[»] chr4 (9 HSPs)
chr4 (9-239)||(55936414-55936646)
chr4 (9-239)||(52914425-52914655)
chr4 (47-239)||(39537686-39537878)
chr4 (75-307)||(23568226-23568456)
chr4 (75-311)||(55934704-55934926)
chr4 (258-311)||(55936662-55936715)
chr4 (258-305)||(39537892-39537939)
chr4 (258-307)||(14834831-14834880)
chr4 (258-311)||(52914671-52914724)
[»] chr2 (9 HSPs)
chr2 (75-311)||(13882526-13882759)
chr2 (75-311)||(14022651-14022884)
chr2 (75-311)||(13988133-13988368)
chr2 (75-311)||(13994031-13994266)
chr2 (75-239)||(8510417-8510581)
chr2 (40-84)||(31023809-31023853)
chr2 (262-312)||(8510350-8510400)
chr2 (258-311)||(31023749-31023802)
chr2 (180-221)||(6090553-6090594)
[»] chr3 (4 HSPs)
chr3 (55-239)||(52865699-52865883)
chr3 (75-311)||(7882345-7882578)
chr3 (9-114)||(54595396-54595500)
chr3 (258-321)||(52865621-52865684)
[»] chr7 (2 HSPs)
chr7 (75-311)||(5950038-5950270)
chr7 (167-225)||(41807141-41807199)
[»] chr1 (2 HSPs)
chr1 (75-316)||(23398483-23398721)
chr1 (180-221)||(26034354-26034395)
[»] chr5 (3 HSPs)
chr5 (75-239)||(8042671-8042835)
chr5 (258-309)||(8042854-8042905)
chr5 (180-217)||(6231789-6231826)
[»] scaffold0047 (1 HSPs)
scaffold0047 (258-307)||(31665-31714)
[»] scaffold0005 (1 HSPs)
scaffold0005 (258-307)||(4819-4868)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 34380162 - 34380457
Alignment:
Q  9 agcagagattctcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgca 108  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  34380162 agcaaagattttcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgagaataacaccctttacgtaaattgtttgca 34380261  T
Q  109 aaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttct 208  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||| ||  ||||||||||||||||||    
T  34380262 aaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctaatgggtcaatctgccaagaaatctgtgttattcaaaatgttctttct 34380361  T
Q  209 aaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatggtaggagacccattaaggtcgcctactgtagcca 307  Q
    ||||| |||||||||||||||||||| ||||                  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34380362 aaatccaatggctcacaaccaatttacaaaccaaaaataaaataaa---attgtagtctcttatggtaggagacccattaaggtcgcctaccgtagcca 34380457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 15517518 - 15517748
Alignment:
Q  9 agcagagattctcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgca 108  Q
    |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15517518 agcaaagattttcctgggaacatatacacaagaaaatcatatgcgcaacaaaatcatttacttaaattgacaataacaccctttacgtaaattgtttgca 15517617  T
Q  109 aaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttct 208  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||| ||||||||||||||||||||||    
T  15517618 aaatcatttaagttattaaagatcaactttaaagattaaaatatactattctaatgggtcaacctgccaaaaaatctgtgccattcaaaatgttctttct 15517717  T
Q  209 aaatctaatggctcacaaccaatttataaac 239  Q
    ||||| |||||||||||||||||||| ||||    
T  15517718 aaatccaatggctcacaaccaatttacaaac 15517748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 307
Target Start/End: Original strand, 15517766 - 15517813
Alignment:
Q  260 tgtagtctcttatggtaggagacccattaaggtcgcctactgtagcca 307  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  15517766 tgtagtctcttatggtagaagacccattaaagtcgcctaccgtagcca 15517813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 7485057 - 7485342
Alignment:
Q  22 ctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgcaaaatcatttaagt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7485057 ctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataacaccctttacgtaaattgtttgcaaaatcatttaagt 7485156  T
Q  122 tttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttctaaatctaatggct 221  Q
    | || ||||||||||||||||||||||||||||||||||||||  ||||||||  ||||||||| ||||||| ||||| ||||||||||||| |||||||    
T  7485157 tattaaagatcaactttaaagattaaaatatactatcctaatgggtcaacctgataagaaatctgtgccatttaaaatattctttctaaatccaatggct 7485256  T
Q  222 cacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||| ||||                  |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||    
T  7485257 cacaaccaatttacaaacaaaaaaaaataaaa----attgtagtctcttatggtagaagacccattaaggtcgcctaccgtagctagagc 7485342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 40225484 - 40225433
Alignment:
Q  260 tgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||| | || ||||||||||||||| ||||||||||| |||||||||||    
T  40225484 tgtagtcacctacggtaggagacccattgaggtcgcctaccgtagccagagc 40225433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 55936414 - 55936646
Alignment:
Q  9 agcagagattctcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgca 108  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  55936414 agcaaagattttcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataacaccctttacataaattgtttgca 55936513  T
Q  109 aaatcatttaagttttttaagatcaactttaaagattaaa--atatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttcttt 206  Q
    |||||||||||||| || || |||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||  || |||| ||||||||||||    
T  55936514 aaatcatttaagttattaaatatcaactttaaagattaaaatatatactatcctaatgagtcaacctgccaagaaatcagtgtcatttaaaatgttcttt 55936613  T
Q  207 ctaaatctaatggctcacaaccaatttataaac 239  Q
    ||||||| ||||||||| |||||||||| ||||    
T  55936614 ctaaatccaatggctcataaccaatttacaaac 55936646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 52914425 - 52914655
Alignment:
Q  9 agcagagattctcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgca 108  Q
    |||| ||||| | ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  52914425 agcaaagatttttctgcgaacatatgcacaagaaaaccatatgcacaacaaaatcatttacttaaattgacaataacaccctttatgtaaattgtttgca 52914524  T
Q  109 aaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttct 208  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||  ||||||||  ||||||| | || |||| |||| ||||| |||    
T  52914525 aaatcatttaagttattaaagatcaactttaaagattaaaatatattatcctagtgggtcaacctgttaagaaatttgtgtcatttaaaacgttctctct 52914624  T
Q  209 aaatctaatggctcacaaccaatttataaac 239  Q
    ||||| |||||||||||||||||||| ||||    
T  52914625 aaatccaatggctcacaaccaatttacaaac 52914655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 47 - 239
Target Start/End: Original strand, 39537686 - 39537878
Alignment:
Q  47 atatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagatta 146  Q
    |||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  39537686 atatgcacaacaaaatcatttacttaaattgacaataacaccatttacgtaaattgtttgcaaaatcatttgagttattaaagatcaactttaaagatta 39537785  T
Q  147 aaatatactatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaac 239  Q
    |||||||||||||||||   ||||||||||||||||||| | ||||||||||||||||||||||||  |||   |||||||||||||| ||||    
T  39537786 aaatatactatcctaataggtcaacctgccaagaaatctgtaccattcaaaatgttctttctaaattcaataattcacaaccaatttacaaac 39537878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 75 - 307
Target Start/End: Complemental strand, 23568456 - 23568226
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| ||  |||| |||    
T  23568456 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaatatcaactttaaagattaaaatatactatcctagtgggtcaatctg 23568357  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  ||||||||||||||| |    
T  23568356 ccaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttaaaaactaaaaaataaaataaa--attgtagtctcttatag 23568259  T
Q  275 taggagacccattaaggtcgcctactgtagcca 307  Q
    ||||||||||||||||||||||||| |||||||    
T  23568258 taggagacccattaaggtcgcctaccgtagcca 23568226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 75 - 311
Target Start/End: Original strand, 55934704 - 55934926
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||| ||             ||||||||||||||||||||||| ||  ||||||||    
T  55934704 ttgacaataacaccatttacgtaaattgtttgcaaaatcatttaagttatt-------------aaagattaaaatatactatcctagtgggtcaacctg 55934790  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
     |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  |||||||||||||||||    
T  55934791 tcaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttacaaactaaaaaaataaaataaa-attgtagtctcttatgg 55934889  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  55934890 taggagacccattaaggtcgcctaccgtagccggagc 55934926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 55936662 - 55936715
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagc 311  Q
    |||||||||| ||||||||||||| |||||||  |||||||| |||||||||||    
T  55936662 attgtagtcttttatggtaggagatccattaaaatcgcctaccgtagccagagc 55936715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 39537892 - 39537939
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagc 305  Q
    |||||||||||||||||||| ||||| |||||| |||||||| |||||    
T  39537892 attgtagtctcttatggtagaagacctattaagatcgcctaccgtagc 39537939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 14834831 - 14834880
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagcca 307  Q
    ||||||||||| || ||||||||||| |||||||| |||||| |||||||    
T  14834831 attgtagtctcctacggtaggagacctattaaggttgcctaccgtagcca 14834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 52914671 - 52914724
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||| |||| ||| || ||||||||| |||||||| |||||||||||    
T  52914671 attgtagtctcgtatgatagaaggcccattaagatcgcctaccgtagccagagc 52914724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 13882759 - 13882526
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  13882759 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctagtgggtcaacctg 13882660  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  |||| ||||||||||||    
T  13882659 ccaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttacaaactaaaaataaaataaa---attgcagtctcttatgg 13882563  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13882562 taggagacccattaaggtcgcctaccgtagccagagc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 14022884 - 14022651
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  14022884 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctagtgggtcaacctg 14022785  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  |||| ||||||||||||    
T  14022784 ccaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttacaaactaaaaataaaataaa---attgcagtctcttatgg 14022688  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14022687 taggagacccattaaggtcgcctaccgtagccagagc 14022651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 13988368 - 13988133
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||| ||||||||    
T  13988368 ttgacaataacaccctttacgtaaattgtttgaaaaatcatttaagttattaaatatcaactttaaagattaaaatatactatcctagtgcgtcaacctg 13988269  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||                  |||||| ||||||||||    
T  13988268 ccaagaaatctgtgccattcaaaatgttctttctaaattcaatggctcacaaccaatttacaaactaaaaaaaataataaaa-attgtaatctcttatgg 13988170  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13988169 taggagacccattaaggtcgcctaccgtagccagagc 13988133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 13994266 - 13994031
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||| ||||||||    
T  13994266 ttgacaataacaccctttacgtaaattgtttgaaaaatcatttaagttattaaatatcaactttaaagattaaaatatactatcctagtgcgtcaacctg 13994167  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    ||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||                  |||||| ||||||||||    
T  13994166 ccaagaaatctgtgccattcaaaatgttctttctaaattcaatggctcacaaccaatttacaaactaaaaaaaataataaaa-attgtaatctcttatgg 13994068  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13994067 taggagacccattaaggtcgcctaccgtagccagagc 13994031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 75 - 239
Target Start/End: Complemental strand, 8510581 - 8510417
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  8510581 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctagtgggtcaacctg 8510482  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaac 239  Q
     ||| |||||| || |||||||||||||||||||||||| |||| ||||||||||||||| ||||    
T  8510481 tcaaaaaatctgtgtcattcaaaatgttctttctaaatccaatgactcacaaccaatttacaaac 8510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 31023853 - 31023809
Alignment:
Q  40 gaaaaccatatgcgcaacaaaatcatttacttaaattgacaataa 84  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  31023853 gaaaatcatatgcgcaacaaaatcatttacttaaattgacaataa 31023809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 8510400 - 8510350
Alignment:
Q  262 tagtctcttatggtaggagacccattaaggtcgcctactgtagccagagca 312  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| |||||||    
T  8510400 tagtctcttatggtaggagacccattaagatcgtctacggtagtcagagca 8510350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 31023802 - 31023749
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagc 311  Q
    |||||||||||||||| ||||||| |||||||  |||||||| |||||||||||    
T  31023802 attgtagtctcttatgataggagatccattaaaatcgcctaccgtagccagagc 31023749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 6090594 - 6090553
Alignment:
Q  180 aaatctatgccattcaaaatgttctttctaaatctaatggct 221  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  6090594 aaatctatgccattcaaaaccttttttctaaatctaatggct 6090553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 55 - 239
Target Start/End: Complemental strand, 52865883 - 52865699
Alignment:
Q  55 aacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatac 154  Q
    |||||||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| |||| |||| || ||||||||||||||||||||||||||||    
T  52865883 aacaaaatcatttacttaaattgacaataacaccatttacgtcaattgtttgtaaaattatttgagttattaaagatcaactttaaagattaaaatatac 52865784  T
Q  155 tatcctaatgcatcaacctgccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaac 239  Q
    ||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  52865783 tatcctaatgggtcaacctgccaagaaatctatgccattcaaaatgctctttctaaatccaatggctcacaaccaatttacaaac 52865699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 75 - 311
Target Start/End: Original strand, 7882345 - 7882578
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| || ||  ||||||||    
T  7882345 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagattaactttaaagattaaaatatactatcatagtgggtcaacctg 7882444  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
     |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  |||||||||| ||||||    
T  7882445 tcaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttacaaactaaaaaaaataaaaa---attgtagtcttttatgg 7882541  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    |||||||||||||||||||||||||  ||||||||||    
T  7882542 taggagacccattaaggtcgcctaccatagccagagc 7882578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 54595500 - 54595396
Alignment:
Q  9 agcagagattctcctgggaacatatacacaagaaaaccatatgcgcaacaaaatcatttacttaaattgacaataataccctttacgtaaattgtttgca 108  Q
    |||| ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  54595500 agcaaagatttttctgggaacatatacataagaaaaccatatgcgcaacaaa-tcatttacttaaattgacaataacaccatttacataaattgtttgca 54595402  T
Q  109 aaatca 114  Q
    ||||||    
T  54595401 aaatca 54595396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 52865684 - 52865621
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagccagagcagtaactaat 321  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| | ||||  ||||||||    
T  52865684 attgtagtctcttttggtaggagacccattaaggtcgcctaccgtagtcggagccctaactaat 52865621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 75 - 311
Target Start/End: Complemental strand, 5950270 - 5950038
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| ||  ||||||||    
T  5950270 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatattatcctagtgggtcaacctg 5950171  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
    | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||                  |||||||||||||||||    
T  5950170 caaagaaatctgtgccattcaaaatgttctttctaaatccaatggctcacaaccaatttacaaactaaaataaaataaa----attgtagtctcttatgg 5950075  T
Q  275 taggagacccattaaggtcgcctactgtagccagagc 311  Q
    ||||||||||||||||||||||||| |||||||||||    
T  5950074 taggagacccattaaggtcgcctaccgtagccagagc 5950038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 41807141 - 41807199
Alignment:
Q  167 tcaacctgccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcaca 225  Q
    |||| |||| || ||||||||| |||||||||  |||||||||| ||||||||||||||    
T  41807141 tcaagctgcaaacaaatctatgtcattcaaaaccttctttctaattctaatggctcaca 41807199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 75 - 316
Target Start/End: Original strand, 23398483 - 23398721
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  23398483 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctagtgggtcaacctg 23398582  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaacnnnnnnnnnnnnnnnnngattgtagtctcttatgg 274  Q
     |||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||                  |||||| ||||||||||    
T  23398583 tcaagaaatctgtgccattcaaaatgttctttctaaatccaatgactcacaaccaacttacaaactaaaaataaataaaa---attgtaatctcttatgg 23398679  T
Q  275 taggagacccattaaggtcgcctactgtagccagagcagtaa 316  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  23398680 taggagacccattaaggtcgcctaccgtagccagagccgtaa 23398721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 26034354 - 26034395
Alignment:
Q  180 aaatctatgccattcaaaatgttctttctaaatctaatggct 221  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  26034354 aaatctatgccattcaaaaccttctttctaaatctaatggct 26034395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 8042671 - 8042835
Alignment:
Q  75 ttgacaataataccctttacgtaaattgtttgcaaaatcatttaagttttttaagatcaactttaaagattaaaatatactatcctaatgcatcaacctg 174  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  8042671 ttgacaataacaccctttacgtaaattgtttgcaaaatcatttaagttattaaagatcaactttaaagattaaaatatactatcctagtgggtcaacctg 8042770  T
Q  175 ccaagaaatctatgccattcaaaatgttctttctaaatctaatggctcacaaccaatttataaac 239  Q
     ||||||||   ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  8042771 tcaagaaatacgtgccattcaaaatattctttctaaatccaatggctcacaaccaatttacaaac 8042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 8042854 - 8042905
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagccaga 309  Q
    ||||||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  8042854 attgtagtctcttatggtaggagacccattaaaatcgcctaccctagccaga 8042905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 6231789 - 6231826
Alignment:
Q  180 aaatctatgccattcaaaatgttctttctaaatctaat 217  Q
    |||||||||||||||||||  |||||||||||||||||    
T  6231789 aaatctatgccattcaaaagcttctttctaaatctaat 6231826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 31665 - 31714
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagcca 307  Q
    ||||||||||| || ||||||||||| |||||||| |||||| |||||||    
T  31665 attgtagtctcctacggtaggagacctattaaggttgcctaccgtagcca 31714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 4868 - 4819
Alignment:
Q  258 attgtagtctcttatggtaggagacccattaaggtcgcctactgtagcca 307  Q
    ||||||||||| || ||||||||||| |||||||| |||||| |||||||    
T  4868 attgtagtctcctacggtaggagacctattaaggttgcctaccgtagcca 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University