View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_15 (Length: 328)
Name: NF10678_low_15
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 35374795 - 35374487
Alignment:
| Q |
1 |
taccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggat |
100 |
Q |
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| T |
35374795 |
taccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggat |
35374696 |
T |
|
| Q |
101 |
ggtgtttatgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacatgaggtattcgtatcttcgtgccttatcagc |
200 |
Q |
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| T |
35374695 |
ggtgtttctgaccaactcgtctaagttgtggacgacatgtgtttgcaattggtcgttagaatagtgacgtgaggtattcgtatcttcgtgccttatcagc |
35374596 |
T |
|
| Q |
201 |
attgtttgaaggcgagttagaatccagtggataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtttgaagaaaatagggagtgat |
300 |
Q |
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| T |
35374595 |
attgtttgaaggctagttagaatccagtggataagtagtacgagaaacagcagaaccaatattatgatggggaagaagtgtgaagaaaatagggagtgat |
35374496 |
T |
|
| Q |
301 |
ggtgatggt |
309 |
Q |
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| T |
35374495 |
ggtgatggt |
35374487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 35381036 - 35380949
Alignment:
| Q |
14 |
attgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatg |
101 |
Q |
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| T |
35381036 |
attgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgttgtagacggaggagaggatg |
35380949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 159
Target Start/End: Complemental strand, 30811986 - 30811863
Alignment:
| Q |
36 |
caaataacacaatcacgtagagattcttcgtttgcatacttagcagtgtagacagagaaggggatggtgtttatgaccaactcgtctaagttgtggacga |
135 |
Q |
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||||||||||| | |||| | || |||| |||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||||| || |||| |
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| T |
30811986 |
caaataacacagtaacgtgcaaatgcttcttttgcatacttagcggtgtagatggagaaggagatggtatttatgaccaactcgtctaagttatgaacga |
30811887 |
T |
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| Q |
136 |
catgtgtttgcaattggtcgttag |
159 |
Q |
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|||||||||||| ||||||||||| |
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| T |
30811886 |
catgtgtttgcagttggtcgttag |
30811863 |
T |
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