View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_17 (Length: 312)
Name: NF10678_low_17
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 21240155 - 21240442
Alignment:
| Q |
18 |
gcatgtatgaggatgatctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240155 |
gcatgtatgaggatgatctggataatgctgaggatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaa |
21240254 |
T |
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| Q |
118 |
gttggagcggggtaatttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21240255 |
gttggagcggggtaatttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagaagttacactcgtaaa |
21240354 |
T |
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| Q |
218 |
gtctacacatatgatggcttgtacaaggttgacaaatattgggcagagaagggattgtctggcttcagagtatacaagtttcatctca |
305 |
Q |
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| T |
21240355 |
gtctacacatatgatggattgtacaaggttgacaaatattgggcagaaaagggattgtctggcttcacagtatacaagtttcgtctca |
21240442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 21288553 - 21288272
Alignment:
| Q |
18 |
gcatgtatgaggatgatctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaa |
117 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21288553 |
gcatttatgaggatgatctggataatgctgaagatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaa |
21288454 |
T |
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| Q |
118 |
gttggagcggggtaatttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaa |
217 |
Q |
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| T |
21288453 |
gttggagcggggtaatttagcactcaagaactgctgcaagcaagaagtgccagtaagggtgattcgaggtcataattcaagtagtagttacactcgtaaa |
21288354 |
T |
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| Q |
218 |
gtctacacatatgatggcttgtacaaggttgacaaatattgggcagagaagggattgtctggcttcagagtatacaagtttc |
299 |
Q |
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| T |
21288353 |
gtctacacatatgatggtttgtacaaggttgacaaatgttgggcagagaagggattgtctggcttcacagtatacaagtttc |
21288272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 32424134 - 32424007
Alignment:
| Q |
18 |
gcatgtatgaggatgatctggataatgctgagaatgttgtgtacactggtcaaggtgggcataatctgactggtaataagcgtcaaattcaagatcaaaa |
117 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
32424134 |
gcatgtatgaagatgatctggataatgctgaggatgttgtgtacactggtcaaggtgggcataatttgaccggtaataagcgtcaaattcaagatcaaaa |
32424035 |
T |
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| Q |
118 |
gttggagcggggtaatttagcactcaag |
145 |
Q |
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| T |
32424034 |
gttggagcggggtaatttagcactcaag |
32424007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 32422608 - 32422526
Alignment:
| Q |
164 |
gtgccagtaagggtgattcgaggtcataattcaagtagcagttacactcgtaaagtctacacatatgatggcttgtacaaggt |
246 |
Q |
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| T |
32422608 |
gtgccagtaagggtgattcgaggtcatgactcacgtagcagttacactcgtaaagtctatacatatgatggcttgtacaaggt |
32422526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 32422090 - 32422039
Alignment:
| Q |
254 |
tattgggcagagaagggattgtctggcttcagagtatacaagtttcatctca |
305 |
Q |
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|||||||||||||||||| | |||||||||| |||||||||||||| ||||| |
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| T |
32422090 |
tattgggcagagaagggaatatctggcttcacagtatacaagtttcgtctca |
32422039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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