View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_18 (Length: 305)
Name: NF10678_low_18
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 7417482 - 7417774
Alignment:
| Q |
18 |
agatatatagatagagagaaataggtacgtctctttaggatcttggaggtgggaagaattgcgtaccagccatgaaagcattaagaggagctggatatag |
117 |
Q |
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| T |
7417482 |
agatatatagatagagagaaataggtacgtctctttaggatcttggaggtgggaagaattgcgtaccagccatgaaagcattaagaggagctggatatag |
7417581 |
T |
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| Q |
118 |
tgaagaatactcaaatggattgttaacatttgttgtggtggttgttatgagattttgttgatttcctt---------------cgccgccaccggtagaa |
202 |
Q |
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| T |
7417582 |
tgaagaatactcaaatggattgttaacatttgttgttgtggttgttatgagattttgttgatttccttcgccgccacttccaccgccgccaccggtagaa |
7417681 |
T |
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| Q |
203 |
ccctcgccaccaccagcagcagcatttggactagtgtagctaccttcaagtccttgatcatacaaaattcccttgaaaactcttcctcctatg |
295 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7417682 |
ccctcgccaccagcaacagcagcatttggactagtgtagctaccttcaagtccttgatcatacaaaattcccttgaaaactcttcctcctatg |
7417774 |
T |
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