View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_2 (Length: 481)
Name: NF10678_low_2
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 32626936 - 32627106
Alignment:
| Q |
19 |
taccccacaccacagaatataaaccaactgcaataatcagggctccaatgatactgtaatcaacaaatagagaacatcaataaggttatttttagtgaat |
118 |
Q |
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| T |
32626936 |
taccccacaccacagaatataaaccaactgcaataatcagggctccaatgatactgtaatcaacaaatagagaacatcaataagattatttttagtgaat |
32627035 |
T |
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| Q |
119 |
ttgacatttatcaaaactctacgaagccggacactccttagattaagtgtgt-cctgatgtttgacatgtg |
188 |
Q |
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| T |
32627036 |
ttgacatttatcaaaaccctacgaagccggacactccttagattaagtgtgtccctgatgttggacatgtg |
32627106 |
T |
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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 346 - 469
Target Start/End: Original strand, 32627130 - 32627253
Alignment:
| Q |
346 |
gaagaggaatattataagttaccttcccaagtggagttgttctgcaaaaaggaaggaacctaaagcacaagtgatgatcatacaaagggggttaaatgct |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627130 |
gaagaggaatattataagttaccttcccaagtggagttgttctgcaaaaaggaaggaacctaaagcacaagtgatgatcatacaaagggggttaaatgct |
32627229 |
T |
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| Q |
446 |
gtataaaatactggtcctttgctt |
469 |
Q |
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| T |
32627230 |
gtataaaatactggtcctctgctt |
32627253 |
T |
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