View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_20 (Length: 290)
Name: NF10678_low_20
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 36472824 - 36472552
Alignment:
| Q |
1 |
acaaggaaggatgattatttatgcttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggtatatata |
100 |
Q |
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| T |
36472824 |
acaaggaaggatgattatttatgcttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggtatatata |
36472725 |
T |
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| Q |
101 |
taatttatagatctatatagaagaattaaatagctagaaactcaaagttgtatgcaactaattaatctataaaacgcaccaatacttcaaattgaaggat |
200 |
Q |
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| T |
36472724 |
taatttatagatctatatagaagaattaaatagctagaaactcaaagttgtatgcaactaattaatctataaaacgcaccaatacttcaaattgaaggat |
36472625 |
T |
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| Q |
201 |
cattcggtttctagcaccgacatgattttggtctaattcaattacttttcttttctcacattattagggatgt |
273 |
Q |
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| T |
36472624 |
cattcagtttctagcaccgatatgattttggtctaattcaattacttttcttttctcacattattagtgatgt |
36472552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 36463672 - 36463599
Alignment:
| Q |
20 |
tatgcttttgttttgaaacagaattacacaacaacttgctcgttgatatattggatattgaatctacttcaggta |
94 |
Q |
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| T |
36463672 |
tatgcttttgttttgaa-cagagttatacaataacttgctctgtggcatattggatattgaatctacttcaggta |
36463599 |
T |
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