View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10678_low_28 (Length: 240)
Name: NF10678_low_28
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 3364516 - 3364352
Alignment:
| Q |
59 |
tcatgtagaaattcataaaatcacatagactatttaagatcaatccaaaacatataaactacatgatgaaggaatattaacaaacctgggtgtgctcatc |
158 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
3364516 |
tcatgtagaaattcataaaaccacatagactatttaagatcaatccaaaacatataaactacatgatgaaggaaaattaacaaacctaggtgtgctcatc |
3364417 |
T |
|
| Q |
159 |
cttatcaagagcttttcatattcatccgtacatgctggccactccatgtttttctttgaggtatc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3364416 |
cttatcaagagcttttcatattcatccgtacatgctggccactccatgtttttctttgaggtatc |
3364352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 3364556 - 3364527
Alignment:
| Q |
1 |
tcgtttcaacatatatgtggtaggatcatt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3364556 |
tcgtttcaacatatatgtggtaggatcatt |
3364527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University