View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_3 (Length: 466)
Name: NF10678_low_3
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 57 - 453
Target Start/End: Complemental strand, 5243550 - 5243155
Alignment:
| Q |
57 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaacacatgctagctatttattagaaaaac |
156 |
Q |
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| T |
5243550 |
actaccaccaaagaaagtcataacaagacattatatggaaaataaacaaacctaagacacaaacattgactaccacatgctagctatttattagaaaaac |
5243451 |
T |
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| Q |
157 |
taaannnnnnnnnnnnnnn--tttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
254 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243450 |
taaaacacacacaacacacactttgatcattggttagctatatatataaccaactaacagcatgacctaaaacaaactagtttttgacacacattaaagt |
5243351 |
T |
|
| Q |
255 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcctnnnnnnnnnnnnnnnnnnngtcttgaacttggactcatcaatatcaatacc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5243350 |
tagctagcacataagaggtgatgatgatggatcacttgttctggctcct---accaccaccaccaccagtcttgaacttggactcatcaatatcaatacc |
5243254 |
T |
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| Q |
355 |
ttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctctttcct |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5243253 |
ttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacccttctgtccctagttgctccttcct |
5243155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 453
Target Start/End: Original strand, 25522985 - 25523109
Alignment:
| Q |
329 |
aacttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgatacc |
428 |
Q |
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|||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || ||||||| |
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| T |
25522985 |
aacttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgatacc |
25523084 |
T |
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| Q |
429 |
cttctgtccctagttgctctttcct |
453 |
Q |
| |
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||||| |||| | ||||||||||| |
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| T |
25523085 |
cttctctccccatctgctctttcct |
25523109 |
T |
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