View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10678_low_30 (Length: 229)

Name: NF10678_low_30
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10678_low_30
NF10678_low_30
[»] chr5 (7 HSPs)
chr5 (1-229)||(5663614-5663842)
chr5 (15-211)||(5664702-5664895)
chr5 (3-63)||(5046455-5046515)
chr5 (3-63)||(5047226-5047286)
chr5 (110-163)||(5046572-5046625)
chr5 (110-163)||(5047343-5047396)
chr5 (3-63)||(5047997-5048057)
[»] chr4 (7 HSPs)
chr4 (3-211)||(24853353-24853562)
chr4 (110-205)||(24856353-24856448)
chr4 (3-63)||(28787967-28788027)
chr4 (3-63)||(51246629-51246689)
chr4 (6-206)||(28787018-28787223)
chr4 (3-63)||(17525522-17525582)
chr4 (110-160)||(51246738-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (3-174)||(6287-6460)
[»] chr7 (1 HSPs)
chr7 (3-63)||(22622406-22622466)
[»] chr1 (2 HSPs)
chr1 (15-54)||(29371922-29371961)
chr1 (109-213)||(22056427-22056530)
[»] chr8 (1 HSPs)
chr8 (4-74)||(1275221-1275291)
[»] chr3 (2 HSPs)
chr3 (6-63)||(12738201-12738258)
chr3 (6-63)||(12739352-12739409)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5663842 - 5663614
Alignment:
Q  1 tcttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggctt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5663842 tcttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaatatattaagggctt 5663743  T
Q  101 ccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  5663742 ccatatactatattctctccttctacaatgagctatttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatat 5663643  T
Q  201 attttctaacaatatactcataagttatg 229  Q
    ||||||||||||||||||| |||||||||    
T  5663642 attttctaacaatatactcgtaagttatg 5663614  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 5664895 - 5664702
Alignment:
Q  15 aaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaaatacaattacaata-tattaagggcttccatatactatat 113  Q
    |||||||||||||||| ||||    || |||||||||||| |||||||| || | |||||||||||| |||||| |||| ||||||||| | ||  ||||    
T  5664895 aaacatcttcaagcacctata----gacttatatgggtgcaattgtattcaagcttttaaatacaatgacaataatattgagggcttccctgtatcatat 5664800  T
Q  114 tctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttctaaca 211  Q
    |||||||| ||||||| |  || ||||||||||||| ||||||||||||||| |   |||| | ||| ||| ||| ||||| ||||||||||||||||    
T  5664799 tctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttctaaca 5664702  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 5046455 - 5046515
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||| |||| ||||||||    
T  5046455 ttctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtatt 5046515  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 5047226 - 5047286
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    |||||||||||||||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047226 ttctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5047286  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 5046572 - 5046625
Alignment:
Q  110 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 163  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5046572 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 5047343 - 5047396
Alignment:
Q  110 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaat 163  Q
    |||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  5047343 atattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 5047997 - 5048057
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    ||||||||||| |||||||| ||||||| |||||||| | ||||||| |||| ||||||||    
T  5047997 ttctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtatt 5048057  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 24853353 - 24853562
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa-atacaattacaata-tattaagggctt 100  Q
    |||||||| || |||||||||| | ||| |||||||||| |||| ||| ||| |||||||| || | ||||| || ||||  ||||| |||| | |||||    
T  24853353 ttctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataatattgaaggctt 24853452  T
Q  101 ccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatat 200  Q
    |   |||  ||||||| |||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  |||||||||||| ||| |||||    
T  24853453 catcatatcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactccaccactagctcctacactatat 24853552  T
Q  201 attttctaaca 211  Q
     ||||||||||    
T  24853553 -ttttctaaca 24853562  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 205
Target Start/End: Original strand, 24856353 - 24856448
Alignment:
Q  110 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatatttt 205  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||| ||| || |  |||||||||||  |  |||||||||||    
T  24856353 atattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgctactaaacactccaccactagctcatatgatatatatttt 24856448  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 28787967 - 28788027
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    |||||||| ||||||||||||||| ||| ||||||||||  ||||||||||| ||||||||    
T  28787967 ttctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtatt 28788027  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 51246629 - 51246689
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||| ||||||||    
T  51246629 ttctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtatt 51246689  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 28787018 - 28787223
Alignment:
Q  6 tagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaa-acatttaaatacaat-tacaatatattaagggctt--c 101  Q
    ||||| ||||||||||||||||||| ||||||||||  ||||| ||||| |||||||| ||  | |||| || |||| || |  ||||| | |||||  |    
T  28787018 tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtatataatattgaaggcttcac 28787117  T
Q  102 ca-tatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatat 200  Q
    ||  |||  ||||| |||||| ||| |||||| || |||| |||||||||| |||||| |||||||| |||||| | ||||| ||||||| ||| |||||    
T  28787118 caccatatcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctaccattagctcctacactatat 28787217  T
Q  201 attttc 206  Q
     |||||    
T  28787218 tttttc 28787223  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 17525582 - 17525522
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    |||||||| ||||||||||| ||||| |||||||||||| ||||||| |||  ||||||||    
T  17525582 ttctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtatt 17525522  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 51246738 - 51246788
Alignment:
Q  110 atattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtcc 160  Q
    |||||||||||| ||||||||||||| || | |||||||||| ||||||||    
T  51246738 atattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

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Target: scaffold0406 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 6287 - 6460
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacattt-aaatacaattacaat-atattaagggctt 100  Q
    |||||||| |||||||| |||||||||| |||||||||| |||||||||||  |||||||| || | ||| | || ||||  |||| ||||| | |||||    
T  6287 ttctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataatattgaaggctt 6386  T
Q  101 ccatatactatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaacca 174  Q
    |   | |  ||||| |||||| ||| ||||||||| || | |||||||||| ||||||||||||||| ||||||    
T  6387 cacaaaatcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaacca 6460  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 22622466 - 22622406
Alignment:
Q  3 ttctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    ||||| || |||||||||||||| ||||||||||||||  |||||||||||| ||||||||    
T  22622466 ttctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtatt 22622406  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 29371922 - 29371961
Alignment:
Q  15 aaacatcttcaagcacttataaatagaattatatgggtgc 54  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  29371922 aaacatcttcaagcacttataaatagatttatatgggtgc 29371961  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 22056530 - 22056427
Alignment:
Q  109 tatattctctccttctacaatgagctatttaccaatgtgtgtcttcttgtccaatgctattaaccattgtaccactagctcccacaatatatattttcta 208  Q
    |||||||||||||  ||||||||| || |||| ||| |||||| ||||||||||||||| |||| | | ||||| | ||||| ||| ||||| ||||| |    
T  22056530 tatattctctcctcatacaatgagttaattacaaatatgtgtcctcttgtccaatgctactaacaaatctaccattggctcctacactatat-ttttcca 22056432  T
Q  209 acaat 213  Q
    |||||    
T  22056431 acaat 22056427  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 1275291 - 1275221
Alignment:
Q  4 tctagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatttaaacatttaa 74  Q
    ||||||| |||||||| |||||||||| ||||| || |  ||||||||||| |||||||| |||| |||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaa 1275221  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 12738201 - 12738258
Alignment:
Q  6 tagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    ||||| ||||||||||| ||||||| |||||||| | |||| ||||||| ||||||||    
T  12738201 tagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtatt 12738258  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 12739352 - 12739409
Alignment:
Q  6 tagttttagaaacatcttcaagcacttataaatagaattatatgggtgcgattgtatt 63  Q
    ||||| ||||||||||| ||||||  ||||||||||||||| ||| ||| ||||||||    
T  12739352 tagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtatt 12739409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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