View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_33 (Length: 227)
Name: NF10678_low_33
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 54847899 - 54847660
Alignment:
| Q |
1 |
gggaagctggtgaatcaactaaatataaaattatggtatgagaggcacattccgttacttaagaaaatgattggattggattggatttagattcaataat |
100 |
Q |
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| T |
54847899 |
gggaagctggtgaatcaactaaatataaaattatggtatgagaggcacattc-gttacttaagaaaatgattggattggattggatttagattcaataat |
54847801 |
T |
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| Q |
101 |
taaatat----------------ggtaaaagagttgtatgttatcaccgcatccttgtctacacttactctcaatcattcaagagactactaatttcaga |
184 |
Q |
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| T |
54847800 |
taaatatgggaatggtgtttataggtaaaagagttgtatgttatcaccgcatccttgtctacactttctctcaatcattcaagagactactaatttcaga |
54847701 |
T |
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| Q |
185 |
tg---aataaaaatatatgcaatgagcctccctttgcttct |
222 |
Q |
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| T |
54847700 |
tgaataataaaaatatatgcaatgagcctccctttgtttct |
54847660 |
T |
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