View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_38 (Length: 206)
Name: NF10678_low_38
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 39834239 - 39834075
Alignment:
| Q |
27 |
aacattaattaacgtgctgcatgttccacatactgatcactacagtatctacttccaatcccaactcctataaattccatctttgggaacactagtttgg |
126 |
Q |
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| T |
39834239 |
aacattaattaacgtgctgcatgttccacatactgatcactacagtatctacttccaatcccaactcctataaattccatctttgggaacactagtttgg |
39834140 |
T |
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| Q |
127 |
aagagcatttagttaaattcagtctaattattataattaattattagtcaagtaactataacatg |
191 |
Q |
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| T |
39834139 |
aagagcatttagttaaattcattctaattattataattaattattagtcaagtaactataacatg |
39834075 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 39823944 - 39823832
Alignment:
| Q |
19 |
accatatcaacattaattaacgtg-ctgcatgttccacatactgatcacta----cagtatctacttccaatcccaactcctataaattccatctttggg |
113 |
Q |
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|||||| ||||||||||||||||| |||| ||||||||||||||||||||| | || ||| |||||| ||||||||||||||||||||||||||| |
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| T |
39823944 |
accataacaacattaattaacgtgactgcttgttccacatactgatcactatctaccatacatacctccaattccaactcctataaattccatctttggg |
39823845 |
T |
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| Q |
114 |
aacactagtttgg |
126 |
Q |
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| T |
39823844 |
aacactagtttgg |
39823832 |
T |
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