View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10678_low_4 (Length: 444)

Name: NF10678_low_4
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10678_low_4
NF10678_low_4
[»] chr7 (2 HSPs)
chr7 (20-433)||(14963163-14963572)
chr7 (20-433)||(15392635-15393044)
[»] chr2 (1 HSPs)
chr2 (93-159)||(16408373-16408439)
[»] chr3 (2 HSPs)
chr3 (100-157)||(45361980-45362037)
chr3 (86-133)||(43915314-43915361)
[»] chr8 (2 HSPs)
chr8 (86-157)||(2345720-2345791)
chr8 (86-123)||(69081-69118)
[»] chr4 (3 HSPs)
chr4 (86-133)||(33150600-33150647)
chr4 (89-151)||(4626763-4626824)
chr4 (103-159)||(5924580-5924636)
[»] chr1 (3 HSPs)
chr1 (86-131)||(20423173-20423218)
chr1 (87-159)||(7781748-7781820)
chr1 (101-145)||(24305748-24305792)
[»] chr5 (1 HSPs)
chr5 (86-150)||(523478-523542)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 14963572 - 14963163
Alignment:
Q  20 ttagttacctaaaaaatcatgaatattttaatttagtcacttattcatttttagttattactttgctctataatataaatcagatacatcatttactcaa 119  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  14963572 ttagttacctacaaaatcatgaattttttaatttagtcatttattcatttttagtcattactttgctctataatataaatcagatacatcatttattcaa 14963473  T
Q  120 taaacttaaaaaatgacatttttcttatatttgagaccagccctgtgtaagaagtcaaatgcaaatttgtgtagtcattagttagggtcctaccatccat 219  Q
    |||||||||| |||||| |||| |||||||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14963472 taaacttaaagaatgactttttccttatatttgagaccag------gtaagaagtcaaatgtaaatttgtgtagtcattagttagggtcctaccatccat 14963379  T
Q  220 atcaatatgcaatggtgctaggtgtacggcctaaaaatacttctttttaaggtgtagtttaggcatatttgtagtctgttgggcttgtgggcacattgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14963378 atcaatatgcaatggtgctaggtgtacggcctaaaaatacttctttttaaggtgtagtttaggcatatttgtagtctgttgggcttgtgggcacattgtg 14963279  T
Q  320 aaagaaagtaatataagaagggc-atggggccataatggaaaggtgcccttctgtagggaaatgcaattctttgaatg-nnnnnnngtggggttccattc 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||        ||||||||||||||    
T  14963278 aaagaaagtaatataagaagggcaatggggccataatggaaaggtgctcttctgtagggaaatacaattctttgaatgttttttttgtggggttccattc 14963179  T
Q  418 cttcacagcctttcct 433  Q
    ||||||||||||||||    
T  14963178 cttcacagcctttcct 14963163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 433
Target Start/End: Complemental strand, 15393044 - 15392635
Alignment:
Q  20 ttagttacctaaaaaatcatgaatattttaatttagtcacttattcatttttagttattactttgctctataatataaatcagatacatcatttactcaa 119  Q
    ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  15393044 ttagttacctacaaaatcatgaattttttaatttagtcatttattcatttttagtcattactttgctctataatataaatcagatacatcatttattcaa 15392945  T
Q  120 taaacttaaaaaatgacatttttcttatatttgagaccagccctgtgtaagaagtcaaatgcaaatttgtgtagtcattagttagggtcctaccatccat 219  Q
    |||||||||| |||||| |||| |||||||||||||||||      ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15392944 taaacttaaagaatgactttttccttatatttgagaccag------gtaagaagtcaaatgtaaatttgtgtagtcattagttagggtcctaccatccat 15392851  T
Q  220 atcaatatgcaatggtgctaggtgtacggcctaaaaatacttctttttaaggtgtagtttaggcatatttgtagtctgttgggcttgtgggcacattgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15392850 atcaatatgcaatggtgctaggtgtacggcctaaaaatacttctttttaaggtgtagtttaggcatatttgtagtctgttgggcttgtgggcacattgtg 15392751  T
Q  320 aaagaaagtaatataagaagggc-atggggccataatggaaaggtgcccttctgtagggaaatgcaattctttgaatg-nnnnnnngtggggttccattc 417  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||        ||||||||||||||    
T  15392750 aaagaaagtaatataagaagggcaatggggccataatggaaaggtgctcttctgtagggaaatacaattctttgaatgttttttttgtggggttccattc 15392651  T
Q  418 cttcacagcctttcct 433  Q
    ||||||||||||||||    
T  15392650 cttcacagcctttcct 15392635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 16408439 - 16408373
Alignment:
Q  93 tataaatcagatacatcatttactcaataaacttaaaaaatgacatttttcttatatttgagaccag 159  Q
    ||||||||| |||||||||||| ||||| ||||| ||||||||   |||||||||||| ||||||||    
T  16408439 tataaatcaaatacatcatttattcaatgaacttgaaaaatgaatattttcttatattcgagaccag 16408373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 45362037 - 45361980
Alignment:
Q  100 cagatacatcatttactcaataaacttaaaaaatgacatttttcttatatttgagacc 157  Q
    ||||||||| | ||||||||| ||||||||||||||   |||||||||||||||||||    
T  45362037 cagatacattaattactcaatgaacttaaaaaatgaatcttttcttatatttgagacc 45361980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 43915314 - 43915361
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaacttaaaaaat 133  Q
    ||||||||||||||||||||| | ||||| ||||||||| ||||||||    
T  43915314 tctataatataaatcagatacctaatttattcaataaacctaaaaaat 43915361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 2345791 - 2345720
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaacttaaaaaatgacatttttcttatatttgagacc 157  Q
    |||||||||||||||| || ||||||||| ||||| ||| | ||||||||   |||||||||||| ||||||    
T  2345791 tctataatataaatcaaatgcatcatttattcaatgaacctgaaaaatgaatcttttcttatattcgagacc 2345720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 69118 - 69081
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaa 123  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  69118 tctataatataaatcaaatacatcatttattcaataaa 69081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 33150600 - 33150647
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaacttaaaaaat 133  Q
    ||||||||||| |||| |||||||||||| | ||||||||||||||||    
T  33150600 tctataatatagatcaaatacatcatttaatgaataaacttaaaaaat 33150647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 4626763 - 4626824
Alignment:
Q  89 ataatataaatcagatacatcatttactcaataaacttaaaaaatgacatttttcttatattt 151  Q
    |||||||||||||| ||||||||||||||||| || | | |||||||  ||||||||||||||    
T  4626763 ataatataaatcagctacatcatttactcaatgaa-tcagaaaatgaattttttcttatattt 4626824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 5924580 - 5924636
Alignment:
Q  103 atacatcatttactcaataaacttaaaaaatgacatttttcttatatttgagaccag 159  Q
    |||||| ||||| |||||||| ||||||||||| || | ||||||||| ||||||||    
T  5924580 atacattatttattcaataaatttaaaaaatgaaatctatcttatattagagaccag 5924636  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 20423218 - 20423173
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaacttaaaaa 131  Q
    ||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  20423218 tctataatatagatcagatacatcaattactcaagaaacttgaaaa 20423173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 7781748 - 7781820
Alignment:
Q  87 ctataatataaatcagatacatcatttactcaataaacttaaaaaatgacatttttcttatatttgagaccag 159  Q
    ||||||||||||||| ||| ||| ||||   ||| ||||||||||||||   |||||||||||| ||||||||    
T  7781748 ctataatataaatcacatatatcttttatctaatgaacttaaaaaatgaatgttttcttatattcgagaccag 7781820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 24305748 - 24305792
Alignment:
Q  101 agatacatcatttactcaataaacttaaaaaatgacatttttctt 145  Q
    |||||||||| |||||||||||| ||||||||| | |||||||||    
T  24305748 agatacatcaattactcaataaatttaaaaaattaaatttttctt 24305792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 523478 - 523542
Alignment:
Q  86 tctataatataaatcagatacatcatttactcaataaacttaaaaaatgacatttttcttatatt 150  Q
    |||| ||||| ||||| || ||||||||| ||||||||||| ||||||||   ||||||||||||    
T  523478 tctaaaatatgaatcaaatccatcatttattcaataaacttgaaaaatgaatattttcttatatt 523542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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