View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_5 (Length: 443)
Name: NF10678_low_5
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 29336902 - 29336630
Alignment:
| Q |
14 |
aaaccaacacatgtgagatttcctttccacctagaatttgcaatgaagaaactgaacatgtatgtgcatgcaatattcnnnnnnnnnagtcttaaccttc |
113 |
Q |
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| T |
29336902 |
aaaccaacacatgtgagatttcctttccacctagaatttgcaatgaagaaactgaacatgtatgtgcatgcaatattctttttttttagtcttaaccttc |
29336803 |
T |
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| Q |
114 |
tcgttctcagaggaacgagtcctgataatccccacttcgatcggaatttaagttaagcctgaccaatggttgttaccgccatggtttgaattcggttact |
213 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29336802 |
tcgttctcagaggaacgagtcctgataatccccagtttgatcgaaatttaagttaagcctgaccaatggttgttaccgccatggtttgaattcggctact |
29336703 |
T |
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| Q |
214 |
ccggattgattagactgttattgaaaattattaactacttaagtcaaatcatttggctatgaagatactatta |
286 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29336702 |
ccgggttgattagaccgttattgaaaattattaactacttaagtcaaatcacttggctatgaagatactatta |
29336630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 319 - 432
Target Start/End: Complemental strand, 29336597 - 29336484
Alignment:
| Q |
319 |
gtactgtcatggttgttagctaattcactttatctaccatcagtctcacaagttatttagttcttggaattcaataatttaagatannnnnnnncattta |
418 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29336597 |
gtactgtcatggttgttagctaactcactttatctaccatcaatctcacaagttatttagttcttggaattcaataatttaagatattttttttcattta |
29336498 |
T |
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| Q |
419 |
tactagagattcat |
432 |
Q |
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|||||||||||||| |
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| T |
29336497 |
tactagagattcat |
29336484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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