View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_6 (Length: 427)
Name: NF10678_low_6
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 4286454 - 4286173
Alignment:
| Q |
19 |
gtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaacttgtagaacatggtactgttatgcccagtgaaaattgaacagacct |
118 |
Q |
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| T |
4286454 |
gtggtgagtgattgtaacttatgtatttgcttgcagatgagacctctatcgaactagtagaacatggtactgttatgcccggtgaaaattgaacagacct |
4286355 |
T |
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| Q |
119 |
ctacttttatgtgannnnnnnnngctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaatta |
218 |
Q |
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| T |
4286354 |
ctacgtttatgtgattcttttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaatta |
4286255 |
T |
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| Q |
219 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat |
300 |
Q |
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| T |
4286254 |
tcctcaagttcaatataccgagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat |
4286173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 312 - 411
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
| Q |
312 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
411 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
219 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
281 |
Q |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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