View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_8 (Length: 394)
Name: NF10678_low_8
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 33340864 - 33341242
Alignment:
| Q |
1 |
aaatgccatcggaatagactacgacacgatctggctccttgatgatacaaatatctgaatcttctattcccattgcactatataacaaagaaatgtcaga |
100 |
Q |
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| T |
33340864 |
aaatgccatcggaatagactacgacacgatctggctccttgatgatacaaatatctgaatcttctattcccattgcactatataacaaagaaatgtcaga |
33340963 |
T |
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| Q |
101 |
acaaaagaaattgaattgttaactgaatgtacaatctttcacataaaagctatatagttaaattgtttcacaaaatctttctatagaaaaacaaaatcaa |
200 |
Q |
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| T |
33340964 |
acaaaagaaattgaattgttaactgaatgtacaatctttcacataaaagctatatagttaaattgtttcacaaaatctttctatagaaaaacaaaatcaa |
33341063 |
T |
|
| Q |
201 |
ttatcttacataggtacagattcaaggttgaaatagaaatcaaagaaagcttccaaagggttttactcaagtgattttatgaaatggactgtataggttc |
300 |
Q |
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| T |
33341064 |
ttatcttacataggtacagattcaaggttgaaatagaaatcaaagaaagcttccaaagggttttactcaagtgattttatgaaatggactgtataagttc |
33341163 |
T |
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| Q |
301 |
tattgttgaaataatctttcagaaatggaacattacatatacaacactatcatagatatataaacactcttgcaccaag |
379 |
Q |
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| T |
33341164 |
tattgttgaaataatctttcagaaatggaacattacatatacaacactatcatagatatataaacactcttgcaccaag |
33341242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 12844516 - 12844550
Alignment:
| Q |
38 |
cttgatgatacaaatatctgaatcttctattccca |
72 |
Q |
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| T |
12844516 |
cttgatgatacaaatatctgaatcttctattccca |
12844550 |
T |
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