View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10678_low_9 (Length: 383)
Name: NF10678_low_9
Description: NF10678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10678_low_9 |
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| [»] scaffold0221 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 89 - 373
Target Start/End: Complemental strand, 13670010 - 13669726
Alignment:
| Q |
89 |
ttctataataaaacataaaataatctcaaattatttttataagctttctttgagattttataaaaataaattgaaaacaccatataaacttatcataaat |
188 |
Q |
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| T |
13670010 |
ttctataataaaatataaaataatctcaaattatttttataagctttctttgagattttctaaaaataaattgaaaacaccatataaacttatcataaat |
13669911 |
T |
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| Q |
189 |
ttttcaacaggatatttaaatagtttaactacttactatgaaaatagataaactcaaataaatcaataagatacgaattagtagatacctgaactgaaat |
288 |
Q |
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| T |
13669910 |
ttttcaacaggatatttaaatagtttaactacttactatgaaaatagataaactcagataaatcaataagatacgaattagtagatacctgaactgaaat |
13669811 |
T |
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| Q |
289 |
cattagtagcagcagcaagttcatcataatcaaaattcctccaagaaggtttagtaggaatagcaccaatgtcaatactttcttc |
373 |
Q |
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| T |
13669810 |
cattagtagcagcagcaagttcatcataatcaaaattcctccaagaaggtttagtaggaatagcaccaatgtcaatactttcttc |
13669726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 13670060 - 13670011
Alignment:
| Q |
18 |
ctaacactgttgtgcgaacgtacaaaatgagaagctagaacttaactaag |
67 |
Q |
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| T |
13670060 |
ctaacactgttgtgcaaacgtacaaaatgagaagctacaacttaactaag |
13670011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 20240 - 20285
Alignment:
| Q |
80 |
ataaattatttctataataaaacataaaataatctcaaattatttt |
125 |
Q |
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| T |
20240 |
ataagttatttctttaataaaacataaaataatgtcaaattgtttt |
20285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 45234147 - 45234192
Alignment:
| Q |
85 |
ttatttctataataaaacataaaataatctcaaattatttttataa |
130 |
Q |
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| T |
45234147 |
ttatttctataataaaagataaaataaagtcaaattattttcataa |
45234192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 5269475 - 5269519
Alignment:
| Q |
80 |
ataaattatttctataataaaacataaaataatctcaaattattt |
124 |
Q |
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| T |
5269475 |
ataaattatttctttaataaaagataaaataaagtcaaattattt |
5269519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 33882973 - 33883021
Alignment:
| Q |
80 |
ataaattatttctataataaaacataaaataatctcaaattatttttat |
128 |
Q |
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||||||||||||||||| |||| ||||||||| | ||||||||||||| |
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| T |
33882973 |
ataaattatttctataacaaaagataaaataaagtgaaattatttttat |
33883021 |
T |
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