View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_high_4 (Length: 240)
Name: NF10679_high_4
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_high_4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 37915896 - 37915674
Alignment:
| Q |
18 |
gaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagt |
117 |
Q |
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| T |
37915896 |
gaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagt |
37915797 |
T |
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| Q |
118 |
tacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgc |
217 |
Q |
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| T |
37915796 |
tacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgc |
37915697 |
T |
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| Q |
218 |
cgccacaagaataccatcttttc |
240 |
Q |
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| T |
37915696 |
cgccacaagaataccatcttttc |
37915674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 37907743 - 37907544
Alignment:
| Q |
18 |
gaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagt |
117 |
Q |
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| T |
37907743 |
gaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacatcaagtttaggtgacccagcaaccactacaaatgagt |
37907644 |
T |
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| Q |
118 |
tacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgc |
217 |
Q |
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| T |
37907643 |
taccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcactcttaaaatctcttatcttcttttaaatagcatttgc |
37907544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 37960315 - 37960481
Alignment:
| Q |
34 |
catcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattat |
133 |
Q |
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| T |
37960315 |
catcagatttcttaggcttcccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccaggttttgacat |
37960414 |
T |
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| Q |
134 |
ttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttc |
200 |
Q |
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| T |
37960415 |
ttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctttaaatgtcttatcttc |
37960481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 3783880 - 3783822
Alignment:
| Q |
176 |
atcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccat |
234 |
Q |
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| T |
3783880 |
atcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccat |
3783822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 3784041 - 3783968
Alignment:
| Q |
18 |
gaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttagg |
91 |
Q |
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| T |
3784041 |
gaatcaagatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcataaacatcaaatttagg |
3783968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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