View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_low_10 (Length: 249)
Name: NF10679_low_10
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_10 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 3207 - 2980
Alignment:
| Q |
18 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaagaagaaatgtttgggagttttggcgaagactttaaatggcggagtcacaatga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3207 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaaatagcggagtcacaatga |
3108 |
T |
|
| Q |
118 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggttta---aagaataaaaacattgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3107 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaactaagaataaaaacattgg |
3008 |
T |
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| Q |
215 |
tagaaacctttatcttcatcctatgcta |
242 |
Q |
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|||||||||| ||||||||||| ||||| |
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| T |
3007 |
tagaaaccttcatcttcatcctgtgcta |
2980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 31320463 - 31320690
Alignment:
| Q |
18 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaagaagaaatgtttgggagttttggcgaagactttaaatggcggagtcacaatga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31320463 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaaatagcggagtcacaatga |
31320562 |
T |
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| Q |
118 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggttta---aagaataaaaacattgg |
214 |
Q |
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| T |
31320563 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaactaagaataaaaacattgg |
31320662 |
T |
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| Q |
215 |
tagaaacctttatcttcatcctatgcta |
242 |
Q |
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| T |
31320663 |
tagaaaccttcatcttcatcctgtgcta |
31320690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 31332716 - 31332943
Alignment:
| Q |
18 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaagaagaaatgtttgggagttttggcgaagactttaaatggcggagtcacaatga |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31332716 |
agattcttgtttgaaaataattataggaatgccaataccagaaagaataagaaatgtttgggagttttggcgaagactttaaatagcggagtcacaatga |
31332815 |
T |
|
| Q |
118 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggttta---aagaataaaaacattgg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31332816 |
agctgcaatttgaagcaaaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaactaagaataaaaacattgg |
31332915 |
T |
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| Q |
215 |
tagaaacctttatcttcatcctatgcta |
242 |
Q |
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|||||||||| ||||||||||| ||||| |
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| T |
31332916 |
tagaaaccttcatcttcatcctgtgcta |
31332943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 39109793 - 39109893
Alignment:
| Q |
135 |
aaagtaacaatttcagcaggtggagcacttctaacacctccattgatgatttctagtggtttaaagaataaaaacattggtagaaacctttatcttcatc |
234 |
Q |
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|||||||| |||||| || ||||| |||| || |||||||| | |||||||||||||| || | ||| ||||||||| ||||||||| |||| |||| |
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| T |
39109793 |
aaagtaactatttcatcatgtggatcactacttacacctcctctaatgatttctagtggactacaaaatccaaacattggaagaaaccttcatctccatc |
39109892 |
T |
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| Q |
235 |
c |
235 |
Q |
| |
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|
| T |
39109893 |
c |
39109893 |
T |
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