View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_11 (Length: 246)

Name: NF10679_low_11
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_11
NF10679_low_11
[»] chr3 (1 HSPs)
chr3 (9-240)||(28626053-28626295)
[»] chr1 (1 HSPs)
chr1 (150-240)||(11957058-11957148)
[»] scaffold0258 (1 HSPs)
scaffold0258 (150-228)||(20178-20256)
[»] chr4 (2 HSPs)
chr4 (16-142)||(35965755-35965887)
chr4 (67-142)||(52406454-52406529)
[»] chr8 (1 HSPs)
chr8 (67-142)||(31135224-31135299)
[»] chr5 (2 HSPs)
chr5 (67-145)||(37499978-37500055)
chr5 (67-141)||(19463403-19463476)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 28626295 - 28626053
Alignment:
Q  9 gagaaacttctaacatttcaattggat---aggtgagtgtggtgcttgcttggtcaaaattatataaacatatactactaaataatttcacagaatttag 105  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28626295 gagaaacttctaacatttcaattggattataggtgagtgtggtgcttgcttggtcaaaattatataaacatatactactaaataatttcagagaatttag 28626196  T
Q  106 tgcaggcatgtgg--------acccacaatgctatacgtgcctccaccgccggatgcaactctgtttggttgtgttttgtggagaatatggaaacaaagg 197  Q
    ||||||||||||         |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  28626195 tgcaggcatgtgctgatgtgcacccacaatgctatacgtgcctccgccgctggatgcagctctgtttggttgtgttttgtggagcatatggaaacaaagg 28626096  T
Q  198 aataacaaaaattggaatgacataaccgatgctaaatcctatg 240  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  28626095 aataacaaaaattggaatgacataaccgatgctcaatcctatg 28626053  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 240
Target Start/End: Complemental strand, 11957148 - 11957058
Alignment:
Q  150 gatgcaactctgtttggttgtgttttgtggagaatatggaaacaaaggaataacaaaaattggaatgacataaccgatgctaaatcctatg 240  Q
    |||||| |||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  11957148 gatgcagctctgtttggttgtgttttgtaaagcatatggaaacaaaggaataacaaaatttggaatgacataaccgatgctcaatcctatg 11957058  T

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Target: scaffold0258 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 20178 - 20256
Alignment:
Q  150 gatgcaactctgtttggttgtgttttgtggagaatatggaaacaaaggaataacaaaaattggaatgacataaccgatg 228  Q
    |||||| |||| |||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  20178 gatgcagctctatttggttgtgttttatggagcatatgaaaacaaaggaataacaaaatttggaatgacataactgatg 20256  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 35965887 - 35965755
Alignment:
Q  16 ttctaacatttcaattggat---aggtgagtgtggtgcttgcttggtcaaaatt-----atataaacatatactactaaataatttcacagaatttagtg 107  Q
    ||||||||||||||||||||   || |||||||||   ||||||||||||||||     ||||||| ||||| ||||||||||||||||| || ||||||    
T  35965887 ttctaacatttcaattggatgatagatgagtgtggg--ttgcttggtcaaaatttcaacatataaatatatagtactaaataatttcacaaaacttagtg 35965790  T
Q  108 caggcatgtggacccacaatgctatacgtgcctcc 142  Q
    ||| |||||| |||||| ||||| || ||||||||    
T  35965789 cagacatgtgcacccactatgctctatgtgcctcc 35965755  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 52406454 - 52406529
Alignment:
Q  67 atataaacatatactactaaataatttcacagaatttagtgcaggcatgtggacccacaatgctatacgtgcctcc 142  Q
    ||||||||||||| | |||| ||||| |||| || |||||| ||||||||| |||||| || |||||| |||||||    
T  52406454 atataaacatataatgctaagtaattacacaaaacttagtgaaggcatgtgcacccactatactatacttgcctcc 52406529  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 31135224 - 31135299
Alignment:
Q  67 atataaacatatactactaaataatttcacagaatttagtgcaggcatgtggacccacaatgctatacgtgcctcc 142  Q
    ||||||||||||| ||| || |||||| ||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  31135224 atataaacatatagtaccaagtaattttacaaaatttagtgcaggcatgtgcacccactatgctatacatgcctcc 31135299  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 37499978 - 37500055
Alignment:
Q  67 atataaacatatactactaaataatttcacagaatttagtgcaggcatgtggacccacaatgctatacgtgcctccacc 145  Q
    ||||||||||||| ||| || |||||| ||| ||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  37499978 atataaacatatagtaccaa-taattttacaaaatttagtgcaggcatgtgcacccactatgctatacatgcctccacc 37500055  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 19463403 - 19463476
Alignment:
Q  67 atataaacatatactactaaataatttcacagaatttagtgcaggcatgtggacccacaatgctatacgtgcctc 141  Q
    ||||||||||||| ||| || |||||| ||| ||||||||||||| ||||| | |||| ||||||||| ||||||    
T  19463403 atataaacatatagtaccaa-taattttacaaaatttagtgcagggatgtgcatccactatgctatacatgcctc 19463476  T

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