View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_12 (Length: 244)

Name: NF10679_low_12
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_12
NF10679_low_12
[»] chr3 (6 HSPs)
chr3 (1-225)||(1071003-1071220)
chr3 (138-225)||(1086797-1086884)
chr3 (145-225)||(1046330-1046410)
chr3 (4-94)||(53200461-53200551)
chr3 (4-94)||(9797939-9798029)
chr3 (11-94)||(54739850-54739933)
[»] chr2 (5 HSPs)
chr2 (10-94)||(38855678-38855762)
chr2 (10-84)||(5305409-5305483)
chr2 (10-94)||(41534968-41535052)
chr2 (4-42)||(40356129-40356167)
chr2 (19-94)||(32980333-32980409)
[»] chr7 (5 HSPs)
chr7 (4-94)||(9458613-9458703)
chr7 (20-94)||(4920267-4920341)
chr7 (4-94)||(3526150-3526240)
chr7 (4-42)||(26425154-26425192)
chr7 (58-94)||(12217853-12217889)
[»] chr6 (6 HSPs)
chr6 (4-94)||(22300469-22300559)
chr6 (9-94)||(16166766-16166851)
chr6 (4-92)||(4127228-4127316)
chr6 (10-94)||(6139152-6139236)
chr6 (10-94)||(692807-692891)
chr6 (4-94)||(22293473-22293563)
[»] chr1 (7 HSPs)
chr1 (4-94)||(13640717-13640807)
chr1 (11-94)||(35361814-35361897)
chr1 (4-94)||(13260499-13260589)
chr1 (4-94)||(40708334-40708424)
chr1 (11-92)||(12569766-12569847)
chr1 (12-82)||(3289033-3289102)
chr1 (2-94)||(13142349-13142441)
[»] chr8 (3 HSPs)
chr8 (11-94)||(29442435-29442518)
chr8 (12-91)||(27209036-27209115)
chr8 (10-42)||(8109218-8109250)
[»] chr5 (5 HSPs)
chr5 (12-94)||(34583522-34583604)
chr5 (4-94)||(31335261-31335351)
chr5 (11-82)||(10541453-10541524)
chr5 (4-94)||(40897540-40897630)
chr5 (12-94)||(31302946-31303030)
[»] chr4 (8 HSPs)
chr4 (4-94)||(1458287-1458377)
chr4 (11-94)||(53995771-53995854)
chr4 (4-94)||(23601919-23602009)
chr4 (4-82)||(47305151-47305230)
chr4 (9-78)||(47764706-47764774)
chr4 (12-74)||(43138203-43138265)
chr4 (10-42)||(34458097-34458129)
chr4 (22-94)||(51084195-51084267)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1071003 - 1071220
Alignment:
Q  1 tcattgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccctagtcc 100  Q
    ||||||||||||||||||||||||||  ||||||||||||||  |||||| ||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  1071003 tcattgataggtaaaaggccaaggctcgggccttagttttttcaattaggtcaaacctatttaatcagagcccggctcggcccgactcgttccctagtcc 1071102  T
Q  101 caagtcaatttaacatgnnnnnnnnnnnnnnnnnnnnaaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattca 200  Q
    ||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1071103 caagtcaatttaacat-------ttttttttttttttaaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattca 1071195  T
Q  201 ataaatgcaaaatggccaatattct 225  Q
     | ||||||||||||||||||||||    
T  1071196 ttcaatgcaaaatggccaatattct 1071220  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 1086797 - 1086884
Alignment:
Q  138 aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcaataaatgcaaaatggccaatattct 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||    
T  1086797 aaggaaagtcaatttagcatatataaacgcacaaacataaaatgtgtgtctgcctcaaactcaatcaatgcaaaatgaccaatattct 1086884  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 1046330 - 1046410
Alignment:
Q  145 gtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcaataaatgcaaaatggccaatattct 225  Q
    ||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||    
T  1046330 gtcaatttagcatatctaaacacacaaacatccaacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattct 1046410  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 53200461 - 53200551
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||||| |||||||||||| ||||||||||||  |||||||| | ||||||||| |||| ||| |||||||||| | |||||||    
T  53200461 ttgataggtaaaacgccaaggcttagaccttagttttttcaattaggcctagcttatttaagcaaaacccagctcggcccggcccattccc 53200551  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 9798029 - 9797939
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||||||| |||||||||||| ||||||||||  | |||||| | | ||||||| ||||| ||||||||||||| || ||||||    
T  9798029 ttgataggtaaaaggtcaaggcttaggctttagttttttcaactaggcctagcctatttaagcaaagtccggctcggcccggcttattccc 9797939  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 54739850 - 54739933
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||||||||||||||| |||  | |||| ||  | ||||||| ||||| ||  ||||||| |||||||||||    
T  54739850 gtaaaaggccaaggcttaggccttagttgtttcaactaggtcaggcctatttaagcaaaggccaactcggccagactcattccc 54739933  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 38855678 - 38855762
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||||||||||||||||||||  | |||||| | | ||||||| |||||||| ||||||||||||||||||||    
T  38855678 ggtaaaaggccaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagccccgctcggcccgactcattccc 38855762  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 5305483 - 5305409
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccg 84  Q
    |||||||||||||| ||||||||||||||||||  | ||||||   | ||||||| |||||||||||||||||||    
T  5305483 ggtaaaaggccaagtcttaggccttagttttttcaactaggcctggcctatttaagcaaagcccggctcggcccg 5305409  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 41534968 - 41535052
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||| ||||||| ||||||||||| ||||||  | |||||| | | ||||||| ||||||||||||| |||| ||||||||||    
T  41534968 ggtaaacggccaagacttaggccttaattttttcaactaggcctagcctatttaaccaaagcccggctcagcccaactcattccc 41535052  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 40356129 - 40356167
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagtttttt 42  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  40356129 ttgagaggtaaaaggccaagacttaggccttagtttttt 40356167  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 32980409 - 32980333
Alignment:
Q  19 ccaaggcttaggccttagtt-ttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||||||| ||||| | ||| ||| || ||||||| |||||||  |||| ||||| |||||||||    
T  32980409 ccaaggcttaggccttagtttttttaaactagtccagacctatttaagcaaagcctagctcagcccggctcattccc 32980333  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 9458703 - 9458613
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||||| |||||||||||||||||||||||  | |||||| | | |||||||  |||||||||||||| |||||||||||||    
T  9458703 ttgacaggtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagaaaagcccggctcggtccgactcattccc 9458613  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 4920267 - 4920341
Alignment:
Q  20 caaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||||||||| ||||| || |||||| | ||||||||| |||||||||||||| |||  |||||||||    
T  4920267 caaggcttaggccttaggtttttccactaggcctagcttatttaagcaaagcccggctcgccccagctcattccc 4920341  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 3526150 - 3526240
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||||||| ||||||||||||||||||||| |  |  ||| || || ||||||| ||||||||| ||||| ||| || ||||||    
T  3526150 ttgataggtaaaaggtcaaggcttaggccttagttttatcaaccaggtcagacctatttaagcaaagcccgactcggtccggcttattccc 3526240  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 26425192 - 26425154
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagtttttt 42  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  26425192 ttgacaggtaaaaggccaaggcttaagccttagtttttt 26425154  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 12217889 - 12217853
Alignment:
Q  58 tatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||||||||| || |||||||||||    
T  12217889 tatttaatcaaagcccggctcgacctgactcattccc 12217853  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 22300469 - 22300559
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||| ||||||| ||||||||||| |||||  | ||||||| || ||||||| ||||||||||||||||||| |||||||||    
T  22300469 ttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagcaaagcccggctcggcccggctcattccc 22300559  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 16166766 - 16166851
Alignment:
Q  9 aggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||| |||||||||||||||||  | |||||| | ||||||||| ||| | ||||||||||||| |||||||||    
T  16166766 aggtaaaaggccaaggtttaggccttagttttttcaactaggcctagcttatttaagcaatgtccggctcggcccggctcattccc 16166851  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 4127316 - 4127228
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattc 92  Q
    |||| |||||||||||||||||||||||||||| ||||| |  |||||| | | ||||||| ||||||||| ||||||||| |||||||    
T  4127316 ttgacaggtaaaaggccaaggcttaggccttaggtttttccgctaggcctagcctatttaagcaaagcccgactcggcccggctcattc 4127228  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 6139152 - 6139236
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||||||||||||||||||||||  |||||| ||  | ||||||| ||||| | | ||||||||| |||||||||    
T  6139152 ggtaaaaggccaaggcttaggccttagttttttcaattaggtcaggcctatttaagcaaagtcagactcggcccggctcattccc 6139236  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 692891 - 692807
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||||||| |||||| |||||||||||  | |||||| | | ||||||| ||||||||| ||||  |||||||||||||    
T  692891 ggtaaaaggccaagacttaggtcttagttttttcaactaggcctagcctatttaagcaaagcccgactcgatccgactcattccc 692807  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 22293473 - 22293563
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||||||||||||||||||||||| |||||  | |||| ||  | ||||||| |||||  ||||||||| || |||||||||    
T  22293473 ttgacaggtaaaaggccaaggcttaggccttagatttttcaactaggtcaggcctatttaagcaaagttcggctcggctcggctcattccc 22293563  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 13640807 - 13640717
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||| ||||||| ||||||||||| |||||  | ||||||| || ||||||| ||||||||||||||||||| |||||||||    
T  13640807 ttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagcaaagcccggctcggcccggctcattccc 13640717  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 35361897 - 35361814
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||| |||||||||||||||||||||||  | |||||||| | ||| ||| |||||| |||||||||||| |||||||||    
T  35361897 gtaaaaggtcaaggcttaggccttagttttttcaaataggccaagcctatataagcaaagctcggctcggcccggctcattccc 35361814  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 13260499 - 13260589
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| ||||||||||||||| |||||| |||||||||||  | |||||| |   ||||||| |||| ||||||||||||||||||||||||    
T  13260499 ttgacaggtaaaaggccaagacttaggtcttagttttttcaactaggcctagtctatttaagcaaatcccggctcggcccgactcattccc 13260589  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 40708334 - 40708424
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| ||||||||||||||||||||||| ||||||||||  | |||||| | | ||||||| ||||| ||| ||||||||| |||||||||    
T  40708334 ttgacaggtaaaaggccaaggcttaggctttagttttttcaactaggcctagcctatttaaccaaagtccgactcggcccggctcattccc 40708424  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 12569766 - 12569847
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattc 92  Q
    |||||||| |||||||||| ||||||||||||  | |||||| | | ||||||| |||||||| |||||||||  |||||||    
T  12569766 gtaaaaggtcaaggcttagaccttagttttttcaactaggcctagcctatttaagcaaagcccagctcggcccagctcattc 12569847  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 3289102 - 3289033
Alignment:
Q  12 taaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcc 82  Q
    ||||||| |||||||||| ||||||||||||  | |||||| ||| |||||||  ||||||||||||||||    
T  3289102 taaaaggtcaaggcttagaccttagttttttcaactaggcctaacctatttaa-gaaagcccggctcggcc 3289033  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 13142441 - 13142349
Alignment:
Q  2 cattgatagg-taaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||| ||| |||||| ||||||||| ||| ||||||  | ||||||  || ||||||| ||||| ||||||||||||| |||||||||    
T  13142441 cattgataggctaataggcca-ggcttaggctttaattttttcaactaggcctgacctatttaagcaaagtccggctcggcccggctcattccc 13142349  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 29442518 - 29442435
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||| ||||||||| |||||||||||||  | |||||| ||| ||||||| ||||| ||| |||||||||||||||||||    
T  29442518 gtaaaaggtcaaggcttaagccttagttttttcaactaggcctaacctatttaagcaaagtccgactcggcccgactcattccc 29442435  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 27209115 - 27209036
Alignment:
Q  12 taaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcatt 91  Q
    ||||||| ||||||||| |||||||||||||  | |||||| ||| ||||||| ||||||||| |||| |||||||||||    
T  27209115 taaaaggtcaaggcttatgccttagttttttcaactaggcctaacctatttaagcaaagcccgactcgacccgactcatt 27209036  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 8109250 - 8109218
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagtttttt 42  Q
    ||||||||||||| |||||||||||||||||||    
T  8109250 ggtaaaaggccaaagcttaggccttagtttttt 8109218  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 34583522 - 34583604
Alignment:
Q  12 taaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||||||||||| |||||||||||  | |||||| | | |||||||  |||||||||||||||||| |||||||||    
T  34583522 taaaaggccaaggcttaggtcttagttttttcaactaggcctagcctatttaagtaaagcccggctcggcccggctcattccc 34583604  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 31335351 - 31335261
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||||||||| |||||||||||||||||||  |  ||||| | | ||||||| ||||||||| ||||||||  |||||||||    
T  31335351 ttgacaggtaaaaggccaaagcttaggccttagttttttcaacaaggcctagcctatttaagcaaagcccgactcggcccagctcattccc 31335261  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 10541524 - 10541453
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcc 82  Q
    |||||||| |||||||||||||||||||||||  | |||||| | | ||||||| ||||| |||||||||||    
T  10541524 gtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagtccggctcggcc 10541453  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 40897540 - 40897630
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| ||| |||| |||||||||||||| ||||||||||  |  ||||| | | ||||||| ||||||||| ||||||||| |||||||||    
T  40897540 ttgacaggcaaaaagccaaggcttaggctttagttttttcaacaaggcctagcctatttaagcaaagcccgactcggcccggctcattccc 40897630  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 31303030 - 31302946
Alignment:
Q  12 taaaaggccaaggcttaggcctta--gttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    ||||||||||| ||||||||||||  |||||||  |  ||||| | | ||||||| ||||||||||||||||||| |||||||||    
T  31303030 taaaaggccaatgcttaggccttatagttttttcaacaaggcctagcctatttaagcaaagcccggctcggcccggctcattccc 31302946  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 1458377 - 1458287
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| ||||||||||||||| ||||||||||||||||||  |  || || ||| ||||||| |||||||||||||| |||| |||||||||    
T  1458377 ttgacaggtaaaaggccaagacttaggccttagttttttcaacaagacctaacctatttaagcaaagcccggctcgccccggctcattccc 1458287  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 53995771 - 53995854
Alignment:
Q  11 gtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||| |||||||||||||||||||||  | |||||| | | ||||||| |||||||||||| |||| | |||||||||    
T  53995771 gtaaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagcccggcttggcctggctcattccc 53995854  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 23602009 - 23601919
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||| |||||||||| |||||||||||||||||||||||  | |||| | | | ||||||| ||||||||| ||||||| | |||||||||    
T  23602009 ttgacaggtaaaaggtcaaggcttaggccttagttttttcaactaggtctagcctatttaagcaaagcccgactcggccaggctcattccc 23601919  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 47305151 - 47305230
Alignment:
Q  4 ttgataggtaaaaggccaaggcttaggccttagttttttac-attaggccaaacttatttaatcaaagcccggctcggcc 82  Q
    ||||||||||||||| ||| |||||||| |||||||||| | | |||||| | | ||||||||||||| |||||||||||    
T  47305151 ttgataggtaaaaggtcaatgcttaggctttagtttttttcaactaggcctagcctatttaatcaaagtccggctcggcc 47305230  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 47764706 - 47764774
Alignment:
Q  9 aggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctc 78  Q
    |||||||||||||||||| |||||||||||||||  | |||||| | | ||||||| |||||||||||||    
T  47764706 aggtaaaaggccaaggct-aggccttagttttttcaactaggcctagcctatttaagcaaagcccggctc 47764774  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 43138203 - 43138265
Alignment:
Q  12 taaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccg 74  Q
    |||||||||||||||||||||| | ||||||  | |||||||||| || |||| |||||||||    
T  43138203 taaaaggccaaggcttaggcctcaattttttcaactaggccaaacctacttaaacaaagcccg 43138265  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 34458129 - 34458097
Alignment:
Q  10 ggtaaaaggccaaggcttaggccttagtttttt 42  Q
    ||||||||||||||||||||| |||||||||||    
T  34458129 ggtaaaaggccaaggcttaggtcttagtttttt 34458097  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 51084267 - 51084195
Alignment:
Q  22 aggcttaggccttagttttttacattaggccaaacttatttaatcaaagcccggctcggcccgactcattccc 94  Q
    |||||||||| ||||||||||  | ||||||   | ||||||| |||||| |||||||||||| |||||||||    
T  51084267 aggcttaggctttagttttttcaactaggcccggcctatttaagcaaagctcggctcggcccggctcattccc 51084195  T

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