View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10679_low_17 (Length: 240)
Name: NF10679_low_17
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 2488750 - 2488539
Alignment:
| Q |
18 |
ttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488750 |
ttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagca |
2488651 |
T |
|
| Q |
118 |
tctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488650 |
tctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttt |
2488551 |
T |
|
| Q |
218 |
atatatcctttg |
229 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2488550 |
atatatcctttg |
2488539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 41592424 - 41592634
Alignment:
| Q |
19 |
tcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagcat |
118 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||||||| ||| | ||||||||||| || ||| |||||||||| | ||| |||||||| ||||| | |
|
|
| T |
41592424 |
tcttcatatcctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacagtaagttt |
41592523 |
T |
|
| Q |
119 |
ctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagttta |
218 |
Q |
| |
|
|||||| | | || |||||||||||||||| | || |||||||||| ||||| ||| |||||||| ||| || | |||||| | ||||| | ||| |
|
|
| T |
41592524 |
ctcatccaattcttcaaattcattaccagaatctagaactcgcgaaccaagaatcagaatcggtccagagagtctcttcaacattttttggaacatgtta |
41592623 |
T |
|
| Q |
219 |
tatatcctttg |
229 |
Q |
| |
|
|||||| |||| |
|
|
| T |
41592624 |
tatatcttttg |
41592634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University