View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10679_low_2 (Length: 415)
Name: NF10679_low_2
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 154 - 405
Target Start/End: Original strand, 25377736 - 25377986
Alignment:
| Q |
154 |
taacacttcttggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377736 |
taacacttcttggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
25377835 |
T |
|
| Q |
254 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377836 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
25377935 |
T |
|
| Q |
354 |
tgctttaattaccaaaaaccgaccttaaataaaccacctctctatctctctg |
405 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377936 |
tgctttaattacc-aaaaccgaccttaaataaaccacctctctatctctctg |
25377986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 25377637 - 25377705
Alignment:
| Q |
82 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttttgtc |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25377637 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttttgtc |
25377705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University