View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_20 (Length: 239)

Name: NF10679_low_20
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_20
NF10679_low_20
[»] scaffold1712 (1 HSPs)
scaffold1712 (3-224)||(738-961)
[»] chr3 (3 HSPs)
chr3 (101-219)||(19880928-19881048)
chr3 (103-219)||(4516912-4517028)
chr3 (83-145)||(34022335-34022397)
[»] chr5 (3 HSPs)
chr5 (109-224)||(18317622-18317738)
chr5 (83-145)||(23616212-23616274)
chr5 (83-145)||(23847609-23847671)
[»] chr4 (1 HSPs)
chr4 (103-219)||(18036498-18036614)
[»] chr6 (1 HSPs)
chr6 (87-156)||(5632267-5632336)
[»] chr1 (4 HSPs)
chr1 (98-152)||(14762535-14762590)
chr1 (173-219)||(14762620-14762666)
chr1 (77-145)||(7860712-7860781)
chr1 (77-145)||(9614684-9614753)
[»] chr2 (1 HSPs)
chr2 (99-151)||(2894901-2894952)
[»] chr8 (2 HSPs)
chr8 (74-167)||(135944-136038)
chr8 (98-150)||(1236170-1236222)
[»] chr7 (2 HSPs)
chr7 (83-145)||(45110789-45110851)
chr7 (77-145)||(48384846-48384915)


Alignment Details
Target: scaffold1712 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold1712
Description:

Target: scaffold1712; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 961 - 738
Alignment:
Q  3 tatacaatacaaacaacaaacctcattcatttatactccctccagtcttaaatgtaagaagnnnnnnnn--ctcctattagaaaaatggattaattgcat 100  Q
    |||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||          | |||||||  |||||| ||||| |||||    
T  961 tatacaatacaaactacaaacctcatttatttatgctccctccggtcttaaatgtaagaagaaaaaaaaaacacctattaagaaaatgcattaactgcat 862  T
Q  101 ttaagtcatgataaaaaattataccttttcaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgggaatgt 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  861 ttaagtcatgataaaaaattatacctttttaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgagaatgt 762  T
Q  201 gaaacaaattggatataaactaat 224  Q
    ||||||||||||||||||||||||    
T  761 gaaacaaattggatataaactaat 738  T

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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 19880928 - 19881048
Alignment:
Q  101 ttaagtcatgataaa--aaattataccttttcaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgggaat 198  Q
    |||||||||||||||  |||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||| |||||| | || ||||    
T  19880928 ttaagtcatgataaattaaattatacctttcaaattttgcccttgtcttaaaattatacttttaagtcatgaatgtgacttttgaactcaacatgagaat 19881027  T
Q  199 gtgaaacaaattggatataaa 219  Q
    |||||| ||||||||||||||    
T  19881028 gtgaaataaattggatataaa 19881048  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 4516912 - 4517028
Alignment:
Q  103 aagtcatgataaaaaattataccttttcaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgggaatgtga 202  Q
    ||||||| |||||| |||||| |||| |||||||||| || |||| | ||| ||  ||||||||||||| ||||||||| |||||| | |||||||||||    
T  4516912 aagtcatcataaaacattataactttccaattttgcctttatcttcggattttatatttaagtcatgaacgtgacttttgaactcaacatgggaatgtga 4517011  T
Q  203 aacaaattggatataaa 219  Q
    |||| |||||| |||||    
T  4517012 aacagattggaaataaa 4517028  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 34022397 - 34022335
Alignment:
Q  83 aaaatggattaattgcatttaagtcatgataaaaaattataccttttcaattttgcccttgtc 145  Q
    |||||| ||| ||| |||| |||||||| ||||||| || | |||||||||||||||||||||    
T  34022397 aaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtc 34022335  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 18317622 - 18317738
Alignment:
Q  109 tgataaaaaatta-taccttttcaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgggaatgtgaaacaa 207  Q
    ||||||||||||| ||| ||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||   ||||| |  |||||||||||||||    
T  18317622 tgataaaaaattactacttttccaatttttcccttgtcttggaattatatttttaagtcatgaatgtgactttagtactcaacacgggaatgtgaaacaa 18317721  T
Q  208 attggatataaactaat 224  Q
    |||| ||||||| ||||    
T  18317722 attgaatataaattaat 18317738  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 23616212 - 23616274
Alignment:
Q  83 aaaatggattaattgcatttaagtcatgataaaaaattataccttttcaattttgcccttgtc 145  Q
    |||||| ||| ||| |||| |||||||| ||||||| || | |||||||||||||||||||||    
T  23616212 aaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtc 23616274  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 23847609 - 23847671
Alignment:
Q  83 aaaatggattaattgcatttaagtcatgataaaaaattataccttttcaattttgcccttgtc 145  Q
    |||||| ||| ||| |||| |||||||| ||||||| || | |||||||||||||||||||||    
T  23847609 aaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtc 23847671  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 18036614 - 18036498
Alignment:
Q  103 aagtcatgataaaaaattataccttttcaattttgcccttgtcttggaattatacttttaagtcatgaatgtgacttttaaactcagcttgggaatgtga 202  Q
    ||||||| |||||| |||||| |||| |||||||||| || |||| | ||| ||  ||||||||||||| ||||||||| |||||| | |||||||||||    
T  18036614 aagtcatcataaaacattataactttccaattttgcctttatcttcggattttatatttaagtcatgaacgtgacttttgaactcaacatgggaatgtga 18036515  T
Q  203 aacaaattggatataaa 219  Q
    |||| |||||| |||||    
T  18036514 aacagattggaaataaa 18036498  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 5632267 - 5632336
Alignment:
Q  87 tggattaattgcatttaagtcatgataaaaaattataccttttcaattttgcccttgtcttggaattata 156  Q
    |||||||| | |||||||||||||||||||| ||| |||||||||||||| ||||||| |||||| ||||    
T  5632267 tggattaactacatttaagtcatgataaaaagttacaccttttcaattttccccttgttttggaaatata 5632336  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 14762535 - 14762590
Alignment:
Q  98 catttaagtcatgataaaa-aattataccttttcaattttgcccttgtcttggaat 152  Q
    ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  14762535 catttaagtcatgataaaaaaattataccttttcaattttgcttttgtcttggaat 14762590  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 14762620 - 14762666
Alignment:
Q  173 gtgacttttaaactcagcttgggaatgtgaaacaaattggatataaa 219  Q
    ||||||||| |||||| | || |||||||||||||||||||||||||    
T  14762620 gtgacttttgaactcaacatgagaatgtgaaacaaattggatataaa 14762666  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 7860712 - 7860781
Alignment:
Q  77 attagaaaaatggattaattgcatttaagtcatgataaaaaat-tataccttttcaattttgcccttgtc 145  Q
    |||| ||||||| ||| ||| |||| |||||||| |||||||| || | |||||||||||||||||||||    
T  7860712 attaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtc 7860781  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 9614753 - 9614684
Alignment:
Q  77 attagaaaaatggattaattgcatttaagtcatgataaaaaat-tataccttttcaattttgcccttgtc 145  Q
    |||| ||||||| ||| ||| |||| |||||||| |||||||| || | |||||||||||||||||||||    
T  9614753 attaaaaaaatgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtc 9614684  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 2894901 - 2894952
Alignment:
Q  99 atttaagtcatgataaaaaattataccttttcaattttgcccttgtcttggaa 151  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||| ||||||    
T  2894901 atttaagtcatgataaaa-attatacattttcaactttgcccttgttttggaa 2894952  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 135944 - 136038
Alignment:
Q  74 cctattagaaaaatggattaattgcatttaagtcatgataaaa-aattataccttttcaattttgcccttgtcttggaattatacttttaagtca 167  Q
    |||||||| ||||| |||| | | ||||||| ||||||||||| |||||||  ||| ||| ||| ||||||| ||| |||||||| |||||||||    
T  135944 cctattaggaaaattgattgactacatttaaatcatgataaaaaaattatatttttccaagttttcccttgttttgcaattatacatttaagtca 136038  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 1236170 - 1236222
Alignment:
Q  98 catttaagtcatgataaaaaattataccttttcaattttgcccttgtcttgga 150  Q
    |||||||||||| ||||||| | |||  ||||||||||| |||||||||||||    
T  1236170 catttaagtcattataaaaagtgatattttttcaattttacccttgtcttgga 1236222  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 45110789 - 45110851
Alignment:
Q  83 aaaatggattaattgcatttaagtcatgataaaaaattataccttttcaattttgcccttgtc 145  Q
    |||||| ||| ||| |||| |||||||| ||||||| || | |||||||||||||||||||||    
T  45110789 aaaatgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtc 45110851  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 48384846 - 48384915
Alignment:
Q  77 attagaaaaatggattaattgcatttaagtcatgataaaaaat-tataccttttcaattttgcccttgtc 145  Q
    |||| ||||||| |||  || |||| ||||||||||||||||| || | |||||||||||||||||||||    
T  48384846 attaaaaaaatgaattggttacattgaagtcatgataaaaaatgtacaacttttcaattttgcccttgtc 48384915  T

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