View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_24 (Length: 227)

Name: NF10679_low_24
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_24
NF10679_low_24
[»] chr1 (3 HSPs)
chr1 (1-123)||(35245352-35245474)
chr1 (126-223)||(35263910-35264004)
chr1 (129-225)||(35271330-35271423)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 35245352 - 35245474
Alignment:
Q  1 ataggaactgagaaaagagcatatgtagatataatagccaatataaaggttgaagttggagagatgacaatagtaactatatttagttggtaaagtaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35245352 ataggaactgagaaaagagcatatgtagatataatagccaatataaaggttgaagttggagagatgacaatagtaactatatttagttggtaaagtaata 35245451  T
Q  101 aacaaatattttacagatattca 123  Q
    |||||||||||||||||||||||    
T  35245452 aacaaatattttacagatattca 35245474  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 35263910 - 35264004
Alignment:
Q  126 tagtgcatcttcaatgtgtgttgactgttcacgcatgtggctcagtaagcttctactcaggcctgatagtactgtaaggatgaagttaccctagccaa 223  Q
    |||||||||||||||||||||  | ||| ||| |||||| | ||||||||||||||  |||||||||||   ||||||||||||||||||||||||||    
T  35263910 tagtgcatcttcaatgtgtgtccagtgtccacacatgtgtcccagtaagcttctacataggcctgatag---tgtaaggatgaagttaccctagccaa 35264004  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 35271330 - 35271423
Alignment:
Q  129 tgcatcttcaatgtgtgttgactgttcacgcatgtggctcagtaagcttctactcaggcctgatagtactgtaaggatgaagttaccctagccaatt 225  Q
    ||||||||||||||| ||  | ||| ||| ||||||||  |||||||||||||  ||||||||||||   |||||||||||||||||||||||||||    
T  35271330 tgcatcttcaatgtgagtccagtgtccacacatgtggcctagtaagcttctacataggcctgatagt---gtaaggatgaagttaccctagccaatt 35271423  T

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