View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_low_27 (Length: 213)
Name: NF10679_low_27
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 6126931 - 6127113
Alignment:
| Q |
13 |
agaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgt |
112 |
Q |
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| T |
6126931 |
agaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgt |
6127030 |
T |
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| Q |
113 |
ttggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttacc |
195 |
Q |
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| T |
6127031 |
ttggagtatgattgtttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttacc |
6127113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 6135995 - 6136175
Alignment:
| Q |
15 |
aagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgttt |
114 |
Q |
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| T |
6135995 |
aagaaactaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgtcctcatgttcgtga |
6136094 |
T |
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| Q |
115 |
ggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttacc |
195 |
Q |
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| T |
6136095 |
ggagttaaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttacc |
6136175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 13286649 - 13286468
Alignment:
| Q |
14 |
gaagaaactaatggagaaaggtgcaatttatatgaagggacttgggtgtatgatgaatcctaccctctttacgattcttcaacatgtcctcatattcgtt |
113 |
Q |
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| T |
13286649 |
gaagaaactaatggagaaagttgcaatttatatgaagggagttgggtgtatgatgaatcatatcctctttatgattcttcaacatgccctcatgttcgtg |
13286550 |
T |
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| Q |
114 |
tggagtatgattgcttgaaatatggtcgtgttgataaagaatacctcaaatatagatggaaaccaagcacttgtgacttacc |
195 |
Q |
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| T |
13286549 |
aggagttaaattgcttgaagtatggtcgtcttgataagcaatacctcaaatatagatggcaaccaagcaattgtaacttacc |
13286468 |
T |
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